miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00074;mir-29;AADN02039691.1/12626-12563 9031:Gallus gallus
(chicken)
Length = 64
Score = 103 bits (52), Expect = 4e-22
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 13 atgactgatttcttttggtgttcagagtcaatagaattttctagcaccatctgaaatcgg 72
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaataatattttctagcaccatttgaaatcgg 60
Query: 73 ttat 76
||||
Sbjct: 61 ttat 64
>RF00074;mir-29;AAVX01087182.1/157-94 7868:Callorhinchus milii
(ghost shark)
Length = 64
Score = 63.9 bits (32), Expect = 3e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 13 atgactgatttcttttggtgttcagagtcaatagaattttctagcaccatctgaaatcgg 72
||||||||||||| ||||||||||||| | | | | || ||||||||||| |||||||||
Sbjct: 1 atgactgatttctcttggtgttcagaggctacacacttatctagcaccatttgaaatcgg 60
Query: 73 ttat 76
||||
Sbjct: 61 ttat 64
>RF00074;mir-29;AAVX01097121.1/1868-1805 7868:Callorhinchus milii
(ghost shark)
Length = 64
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 14 tgactgatttcttttggtgttcagagtc 41
||||||||||||||||||||||||||||
Sbjct: 2 tgactgatttcttttggtgttcagagtc 29
>RF00074;mir-29;AAWZ01025678.1/1955-1892 28377:Anolis carolinensis
(green anole)
Length = 64
Score = 48.1 bits (24), Expect = 2e-05
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 13 atgactgatttcttttggtgttcagagtcaatagaattttctagcaccatctgaaatcgg 72
|||||||||||||| |||||||| ||||| | ||||||||||||| |||||||||
Sbjct: 1 atgactgatttcttctggtgttcggagtctagttctctttctagcaccatttgaaatcgg 60
Query: 73 ttat 76
||||
Sbjct: 61 ttat 64
>RF00074;mir-29;BAAF04011253.1/3876-3938 8090:Oryzias latipes
(Japanese medaka)
Length = 63
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 14 tgactgatttcttttggtgttcagagtc 41
|||| |||||||||||||||||||||||
Sbjct: 2 tgaccgatttcttttggtgttcagagtc 29
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 50 tttctagcaccatctgaaatcggtta 75
||||||||||||| ||||||||||||
Sbjct: 37 tttctagcaccatttgaaatcggtta 62
>RF00074;mir-29;AAVX01247987.1/1-62 7868:Callorhinchus milii
(ghost shark)
Length = 62
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 attttctagcaccatctgaaatcggtt 74
||||||||||||||| |||||||||||
Sbjct: 36 attttctagcaccatttgaaatcggtt 62
>RF00074;mir-29;CAAE01015043.1/838981-839043 99883:Tetraodon
nigroviridis
Length = 63
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 50 tttctagcaccatctgaaatcggtta 75
||||||||||||| ||||||||||||
Sbjct: 37 tttctagcaccatttgaaatcggtta 62
>RF00074;mir-29;CAAB01003353.1/24980-24916 31033:Takifugu rubripes
Length = 65
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 ttctagcaccatctgaaatcggttat 76
|||||||||||| |||||||||||||
Sbjct: 40 ttctagcaccatttgaaatcggttat 65
>RF00074;mir-29;CAAB01004459.1/12691-12629 31033:Takifugu rubripes
Length = 63
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 50 tttctagcaccatctgaaatcggtta 75
||||||||||||| ||||||||||||
Sbjct: 37 tttctagcaccatttgaaatcggtta 62
>RF00074;mir-29;BAAE01022609.1/1233-1169 8090:Oryzias latipes
(Japanese medaka)
Length = 65
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 ttctagcaccatctgaaatcggttat 76
|||||||||||| |||||||||||||
Sbjct: 40 ttctagcaccatttgaaatcggttat 65
