miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
cress)
Length = 142
Score = 281 bits (142), Expect = 1e-75
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 7 tcaccatcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcct 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcaccatcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcct 60
Query: 67 cgtgacttttaaacctttattggtttgtgagcagggattggatcccgccttgcatcaact 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgtgacttttaaacctttattggtttgtgagcagggattggatcccgccttgcatcaact 120
Query: 127 gaatcggatcctcgaggtgtaa 148
||||||||||||||||||||||
Sbjct: 121 gaatcggatcctcgaggtgtaa 142
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 161 bits (81), Expect = 3e-39
Identities = 130/143 (90%), Gaps = 5/143 (3%)
Strand = Plus / Plus
Query: 7 tcaccatcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcct 66
||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 1 tcaccgtcgggctcggattcgcttggtgcaggtcgggaaccaact-ggctgacacagcca 59
Query: 67 cgtgacttttaaacctttattggtttgtgagc-agggattggatcccgccttgcatcaac 125
|||||||| || | || ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 60 cgtgacttgta---ccttgttggtttgtgagccagggattggatcccgccttgcatcaac 116
Query: 126 tgaatcggatcctcgaggtgtaa 148
||||||||| || ||||||||||
Sbjct: 117 tgaatcggagccccgaggtgtaa 139
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 159 bits (80), Expect = 1e-38
Identities = 122/134 (91%), Gaps = 4/134 (2%)
Strand = Plus / Plus
Query: 7 tcaccatcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcct 66
||||| |||||||||||||||||||||||||||||||||| |||| | ||||||| |||
Sbjct: 1 tcaccgtcgggctcggattcgcttggtgcaggtcgggaactaatttg-ctgacacggcca 59
Query: 67 cgtgacttttaaacctttattggtttgtgagcagggattggatcccgccttgcatcaact 126
||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 cgtgagtttt---cctttgttggtttgtgagcagggattggatcccgccttgcatcaact 116
Query: 127 gaatcggatcctcg 140
|||||||| |||||
Sbjct: 117 gaatcggagcctcg 130
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 127 bits (64), Expect = 5e-29
Identities = 106/118 (89%), Gaps = 4/118 (3%)
Strand = Plus / Plus
Query: 19 tcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaa 78
|||||||||||||||||||||||||||| |||| ||||||||||||| |||||||| |
Sbjct: 13 tcggattcgcttggtgcaggtcgggaactaatt-ggctgacacagccacgtgactt---a 68
Query: 79 acctttattggtttgtgagcagggattggatcccgccttgcatcaactgaatcggatc 136
| | | ||||| |||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 69 atcctcattggcttgtgaccaggaattggatcccgccttgcatcaactgaatcggatc 126
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 119 bits (60), Expect = 1e-26
Identities = 114/129 (88%), Gaps = 6/129 (4%)
Strand = Plus / Plus
Query: 7 tcaccatcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgac-acagcc 65
||||| |||||||||||||||||||||||||||||||||| ||| ||||| ||||||
Sbjct: 1 tcaccgtcgggctcggattcgcttggtgcaggtcgggaactgatt-ggctggttacagcc 59
Query: 66 tcgtgacttttaaacctttattggtttgtgagcagggattggatcccgccttgcatcaac 125
|||| | ||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 60 acgtggcgttt----ctttattggtttgtgagcagtgattggatcccgccttgcatcaac 115
Query: 126 tgaatcgga 134
|||||||||
Sbjct: 116 tgaatcgga 124
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 119 bits (60), Expect = 1e-26
Identities = 113/128 (88%), Gaps = 7/128 (5%)
Strand = Plus / Plus
Query: 7 tcaccatcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcct 66
||||| |||||||||||||||||||||||||||||||| | | || ||||||||||||
Sbjct: 1 tcaccgtcgggctcggattcgcttggtgcaggtcggga--ctaatccgctgacacagcca 58
Query: 67 cgtgacttttaaacctttattggtttgtgagcagggattggatcccgccttgcatcaact 126
|||| |||||| ||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 59 cgtgtctttta----cttattgg-ttgtgagcagggattggctcccgccttgcatcaact 113
Query: 127 gaatcgga 134
||||||||
Sbjct: 114 gaatcgga 121
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
pekinensis
Length = 137
Score = 97.6 bits (49), Expect = 4e-20
Identities = 103/118 (87%), Gaps = 6/118 (5%)
Strand = Plus / Plus
Query: 17 gctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgactttt 76
||||||||||||||||||||||||||||||||||| | |||||||| || || | ||||
Sbjct: 11 gctcggattcgcttggtgcaggtcgggaaccaatt-gtctgacacatccacga-agtttt 68
Query: 77 aaacctttattggtttgtgagcagggattggatcccgccttgcatcaactgaatcgga 134
| || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 69 ac----ttgctggtttgtgagcagggattggatcccgccttgcatcaaatgaatcgga 122
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 89.7 bits (45), Expect = 1e-17
Identities = 104/122 (85%), Gaps = 5/122 (4%)
Strand = Plus / Plus
Query: 13 tcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgac 72
|||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||
Sbjct: 7 tcgggctcggattcgcttggtgcaggtcgggaactgatt-ggctgacacagccacgtgga 65
Query: 73 ttttaaacctttattggtttgtgagcagggattggatcccgccttgcatcaactgaatcg 132
|| || | ||||| ||||||||||||| | ||||||||||||||||||||||||
Sbjct: 66 tt----cccatcattggcatgtgagcagggatctgctcccgccttgcatcaactgaatcg 121
Query: 133 ga 134
||
Sbjct: 122 ga 123
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 85.7 bits (43), Expect = 2e-16
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 13 tcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgac 59
||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 7 tcgggctcggattcgcttggtgcaggtcgggaaccaatttggctgac 53
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 63.9 bits (32), Expect = 6e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 103 attggatcccgccttgcatcaactgaatcgga 134
||||||||||||||||||||||||||||||||
Sbjct: 32 attggatcccgccttgcatcaactgaatcgga 63
>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
Length = 131
Score = 63.9 bits (32), Expect = 6e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 7 tcaccatcgggctcggattcgcttggtgcaggtcgggaac 46
||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 1 tcaccgtcgagctcggattcgcttggtgcaggtcgggaac 40
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 109 tcccgccttgcatcaactgaatcgga 134
|||||| |||||||||||||||||||
Sbjct: 92 tcccgctttgcatcaactgaatcgga 117
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 63.9 bits (32), Expect = 6e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 103 attggatcccgccttgcatcaactgaatcgga 134
||||||||||||||||||||||||||||||||
Sbjct: 135 attggatcccgccttgcatcaactgaatcgga 166
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 22 gattcgcttggtgcaggtcgggaaccaattcggc 55
||||||||||||||||||||||||| |||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaactgattcggc 49
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 63.9 bits (32), Expect = 6e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 103 attggatcccgccttgcatcaactgaatcgga 134
||||||||||||||||||||||||||||||||
Sbjct: 111 attggatcccgccttgcatcaactgaatcgga 142
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcgggaaccaattcggc 55
|||||||||||||||||||||||| |||||||
Sbjct: 17 attcgcttggtgcaggtcgggaactgattcggc 49
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 63.9 bits (32), Expect = 6e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 103 attggatcccgccttgcatcaactgaatcgga 134
||||||||||||||||||||||||||||||||
Sbjct: 77 attggatcccgccttgcatcaactgaatcgga 108
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcgggaacca 48
||||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacca 42
>RF00677;MIR168;AM900012.1/30-111 264416:Diplotaxis tenuifolia
Length = 82
Score = 60.0 bits (30), Expect = 9e-09
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 86 ttggtttgtgagcagggattggatcccgccttgcatcaactgaatc 131
|||| |||||||||||||| |||||| ||||| |||||||||||||
Sbjct: 21 ttggcttgtgagcagggatcggatcctgccttccatcaactgaatc 66
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 60.0 bits (30), Expect = 9e-09
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 85 attggtttgtgagcagggattggatcccgccttgcatcaactgaatcgga 134
||||| |||||| | | ||| |||||||||||||||||||||||||||||
Sbjct: 74 attggcttgtgaccggcgatcggatcccgccttgcatcaactgaatcgga 123
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 18 ctcggattcgcttggtgcaggtcgggaac 46
|||||||||||||||||||||||||||||
Sbjct: 12 ctcggattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 103 attggatcccgccttgcatcaactgaatcg 132
||||||||||||||||||||||||||||||
Sbjct: 112 attggatcccgccttgcatcaactgaatcg 141
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcgggaac 46
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 18 ctcggattcgcttggtgcaggtcgggaac 46
|||||||||||||||||||||||||||||
Sbjct: 12 ctcggattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
Length = 126
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 19 tcggattcgcttggtgcaggtcgggaac 46
||||||||||||||||||||||||||||
Sbjct: 13 tcggattcgcttggtgcaggtcgggaac 40
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 113 gccttgcatcaactgaatcgga 134
||||||||||||||||||||||
Sbjct: 92 gccttgcatcaactgaatcgga 113
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 107 gatcccgccttgcatcaactgaatcgga 134
||||||||||||||||||||||||||||
Sbjct: 107 gatcccgccttgcatcaactgaatcgga 134
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcgggaacc 47
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41
>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
(barrel medic)
Length = 112
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 22 gattcgcttggtgcaggtcgggaacca 48
|||||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaacca 42
>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
Length = 126
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 22 gattcgcttggtgcaggtcgggaac 46
|||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
bittercress)
Length = 126
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 22 gattcgcttggtgcaggtcgggaac 46
|||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaac 40
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 109 tcccgccttgcatcaactgaatc 131
|||||||||||||||||||||||
Sbjct: 88 tcccgccttgcatcaactgaatc 110
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 22 gattcgcttggtgcaggtcgggaac 46
|||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaac 40
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 107 gatcccgccttgcatcaactgaatc 131
|||||||||||||||||||||||||
Sbjct: 69 gatcccgccttgcatcaactgaatc 93
