miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00758;mir-346;AABR04015636.1/21624-21527 10116:Rattus
norvegicus (Norway rat)
Length = 98
Score = 194 bits (98), Expect = 1e-49
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 tctgtgttgggcatctgtctgcctgagtgcctgcctctctgttgctctgaaggaggcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctgtgttgggcatctgtctgcctgagtgcctgcctctctgttgctctgaaggaggcagg 60
Query: 61 ggctgggcctgcagctgcctgggcagagctgctccttc 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggctgggcctgcagctgcctgggcagagctgctccttc 98
>RF00758;mir-346;ABRT010507805.1/103-1 9478:Tarsius syrichta
(Philippine tarsier)
Length = 103
Score = 121 bits (61), Expect = 2e-27
Identities = 73/77 (94%)
Strand = Plus / Plus
Query: 1 tctgtgttgggcatctgtctgcctgagtgcctgcctctctgttgctctgaaggaggcagg 60
|||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 1 tctgtgttgggcgtctgtctgcccgcatgcctgcctctctgttgctctgaaggaggcagg 60
Query: 61 ggctgggcctgcagctg 77
|||||||||||||||||
Sbjct: 61 ggctgggcctgcagctg 77
>RF00758;mir-346;ABRQ01820904.1/910-1009 9813:Procavia capensis
(cape rock hyrax)
Length = 100
Score = 81.8 bits (41), Expect = 2e-15
Identities = 64/69 (92%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 28 tgcctgcctctctgttgctctgaaggaggcaggggctgggcctgcagctgcctgggcaga 87
|||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 32 tgcctgtctctctgtc-ctctgaaggaggcaggggctggg-ctgcagctgcctgggcaga 89
Query: 88 gctgctcct 96
|| ||||||
Sbjct: 90 gccgctcct 98
>RF00758;mir-346;AAIY01391882.1/1153-1058 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 96
Score = 79.8 bits (40), Expect = 6e-15
Identities = 84/96 (87%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 1 tctgtgttgggcatctgtctgcctgagtgcctgcctctctgttgctctgaaggaggcagg 60
|||||||||||| ||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 1 tctgtgttgggcgcctgtctgcccacctgcctgcctctctgtca-tctgaaggaggcagg 59
Query: 61 ggctgggcctgcagctgcctgggcagagctgctcct 96
||| |||| |||||||||||||||||||| ||||||
Sbjct: 60 ggccgggc-tgcagctgcctgggcagagcggctcct 94
