miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00659;mir-365;AAIY01424277.1/585-676 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 92
Score = 155 bits (78), Expect = 1e-37
Identities = 84/86 (97%)
Strand = Plus / Plus
Query: 1 acagcaagaaaaatgagggactttcaggggcagctgtgtttcctgactcagtcataatgc 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 acagcaagaaaaatgagggactttcaggggcagctgtgttttgtgactcagtcataatgc 60
Query: 61 ccctaaaaatccttattgttcttgca 86
||||||||||||||||||||||||||
Sbjct: 61 ccctaaaaatccttattgttcttgca 86
>RF00659;mir-365;AANG01161851.1/1480-1570 9685:Felis catus
(domestic cat)
Length = 91
Score = 135 bits (68), Expect = 1e-31
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 acagcaagaaaaatgagggactttcaggggcagctgtgtttcctgactcagtcataatgc 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 acagcaagaaaaatgagggactttcaggggcagctgtgttttctgactcagtcataatgc 60
Query: 61 ccctaaaaatcc 72
||||||||||||
Sbjct: 61 ccctaaaaatcc 72
>RF00659;mir-365;AAPE01619298.1/1229-1137 59463:Myotis lucifugus
(little brown bat)
Length = 93
Score = 133 bits (67), Expect = 4e-31
Identities = 83/87 (95%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 1 acagcaagaaaaatgagggactttcaggggcagctgtgtttcctgactc-agtcataatg 59
|||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 1 acagcaagaaaaataagggactttcaggggcagctgtgttttctgactcaagtcataatg 60
Query: 60 cccctaaaaatccttattgttcttgca 86
||||||||||||||||||| |||||||
Sbjct: 61 cccctaaaaatccttattgctcttgca 87
>RF00659;mir-365;BAAE01286148.1/272-364 8090:Oryzias latipes
(Japanese medaka)
Length = 93
Score = 107 bits (54), Expect = 2e-23
Identities = 79/86 (91%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 2 cagcaagaaaaatgagggactttcaggggcagctgtgtttcctga-ctcagtcataatgc 60
||||||||||||||||||||||| |||||||||||||||| | | | ||||||||||||
Sbjct: 2 cagcaagaaaaatgagggacttttaggggcagctgtgttttattaacccagtcataatgc 61
Query: 61 ccctaaaaatccttattgttcttgca 86
|||||||||||||||||| |||||||
Sbjct: 62 ccctaaaaatccttattgctcttgca 87
>RF00659;mir-365;AADN02023913.1/98870-98778 9031:Gallus gallus
(chicken)
Length = 93
Score = 75.8 bits (38), Expect = 8e-14
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 10 aaaatgagggactttcaggggcagctgtgtttcc-tgactcagtcataatgcccctaaaa 68
||||||||||||||| ||||||| ||||||||| | || | |||||||||||||||||
Sbjct: 10 aaaatgagggacttttgggggcagatgtgtttccattacactatcataatgcccctaaaa 69
Query: 69 atccttattgttcttgca 86
|||||||||| |||||||
Sbjct: 70 atccttattgctcttgca 87
>RF00659;mir-365;CU138533.13/80864-80956 7955:Danio rerio
(zebrafish)
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 52 tcataatgcccctaaaaatccttattgttcttgca 86
||||||||||||||||||||||||||| |||||||
Sbjct: 53 tcataatgcccctaaaaatccttattgctcttgca 87
>RF00659;mir-365;AAVX01470594.1/166-258 7868:Callorhinchus milii
(ghost shark)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 50 agtcataatgcccctaaaaatccttatt 77
||||||||||||||||||||||| ||||
Sbjct: 51 agtcataatgcccctaaaaatccctatt 78
