miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00840;mir-374;AJ421479.1/16189-16259 10090:Mus musculus (house
mouse)
Length = 71
Score = 111 bits (56), Expect = 1e-24
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 1 ctcggatggatataatacaacctgctaagtgttctagcacttagcacgttgtattattat 60
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 2 ctcgggtggatataatacaacctgctaagtgttctagcacttagcaggttgtattatcat 61
Query: 61 tgtccgag 68
||||||||
Sbjct: 62 tgtccgag 69
Score = 52.0 bits (26), Expect = 9e-07
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 12 ataatacaacctgctaagtgttctagcacttagcacgttgtattat 57
|||||||||||||||||||| | | ||||||||| ||||||||||
Sbjct: 58 ataatacaacctgctaagtgctagaacacttagcaggttgtattat 13
>RF00840;mir-374;AALT01656114.1/3449-3379 42254:Sorex araneus
(European shrew)
Length = 71
Score = 91.7 bits (46), Expect = 1e-18
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 1 ctcggatggatataatacaacctgctaagtgttctagcacttagcacgttgtattattat 60
|||||||||||||||||||||||||||||||| ||| |||||| || |||||||||||||
Sbjct: 2 ctcggatggatataatacaacctgctaagtgtactaccacttaccaggttgtattattat 61
Query: 61 tgtccg 66
|||||
Sbjct: 62 cgtccg 67
>RF00840;mir-374;AAGU02466059.1/2740-2670 9785:Loxodonta africana
(African savanna elephant)
Length = 71
Score = 83.8 bits (42), Expect = 2e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 1 ctcggatggatataatacaacctgctaagtgttctagcacttagcacgttgtattattat 60
|||||||| ||||||||||||||||||||||| |||||||||| || | |||||||| ||
Sbjct: 2 ctcggatgaatataatacaacctgctaagtgtcctagcacttatcaggctgtattatcat 61
Query: 61 tgtccg 66
||||||
Sbjct: 62 tgtccg 67
>RF00840;mir-374;AAGV020234407.1/12295-12225 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 71
Score = 54.0 bits (27), Expect = 2e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 5 gatggatataatacaacctgctaagtgttctagca 39
|||||||||||||||||||| ||||||| ||||||
Sbjct: 6 gatggatataatacaacctgttaagtgtcctagca 40
>RF00840;mir-374;AAPE01385052.1/350-280 59463:Myotis lucifugus
(little brown bat)
Length = 71
Score = 46.1 bits (23), Expect = 5e-05
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 5 gatggatataatacaacctgctaagtgttctagcacttagcacgttgtattattattgt 63
|||| ||||||||||||||| |||||| | |||||||| || |||||| ||| |||||
Sbjct: 6 gatgtatataatacaacctggtaagtggcccagcacttaccaggttgtactatcattgt 64
>RF00840;mir-374;AANN01604271.1/62-133 9365:Erinaceus europaeus
(western European hedgehog)
Length = 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 14 aatacaacctgctaagtgttctagcactta 43
|||||| |||||||||||||| ||||||||
Sbjct: 15 aatacagcctgctaagtgttccagcactta 44
>RF00840;mir-374;AAGW01240856.1/838-768 9986:Oryctolagus cuniculus
(rabbit)
Length = 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 11 tataatacaacctgctaagtgttctagcacttagcacgttgtattattattgtc 64
|||||||||||||| |||||||| |||||||| || ||||||| | ||||||
Sbjct: 12 tataatacaacctgataagtgttacagcacttaccagattgtattgtaattgtc 65
