miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00700;mir-375;AAGU02520619.1/1351-1284 9785:Loxodonta africana
(African savanna elephant)
Length = 68
Score = 125 bits (63), Expect = 8e-29
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 11 cgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtgaggca 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 cgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtgaggca 65
Query: 71 ggg 73
|||
Sbjct: 66 ggg 68
>RF00700;mir-375;AADN02016765.1/7226-7294 9031:Gallus gallus
(chicken)
Length = 69
Score = 61.9 bits (31), Expect = 1e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 34 gacctgagcgttttgttcgttcggctcgcgtgaggcagg 72
||||||| ||||||||||||||||||||||| |||||||
Sbjct: 30 gacctgaacgttttgttcgttcggctcgcgttaggcagg 68
>RF00700;mir-375;ABQO010847357.1/1620-1552 9315:Macropus eugenii
(tammar wallaby)
Length = 69
Score = 58.0 bits (29), Expect = 2e-08
Identities = 49/53 (92%), Gaps = 2/53 (3%)
Strand = Plus / Plus
Query: 18 cccctcgcac-aaaccggacctgagcgttttgttcgttcggctcgcgtgaggc 69
|||||||||| |||||||| |||| ||| ||||||||||||||||||||||||
Sbjct: 14 cccctcgcacaaaaccgga-ctgaacgtattgttcgttcggctcgcgtgaggc 65
>RF00700;mir-375;ABEP02038283.1/5668-5595 7739:Branchiostoma
floridae (Florida lancelet)
Length = 74
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 cgttttgttcgttcggctcgcgt 64
|||||||||||||||||||||||
Sbjct: 43 cgttttgttcgttcggctcgcgt 65
>RF00700;mir-375;CU929360.7/11656-11724 7955:Danio rerio
(zebrafish)
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 gttttgttcgttcggctcgcgt 64
||||||||||||||||||||||
Sbjct: 39 gttttgttcgttcggctcgcgt 60
>RF00700;mir-375;CU468956.14/114092-114163 7955:Danio rerio
(zebrafish)
Length = 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 gttttgttcgttcggctcgcgt 64
||||||||||||||||||||||
Sbjct: 42 gttttgttcgttcggctcgcgt 63
>RF00700;mir-375;BAAF04058576.1/818-750 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 gttttgttcgttcggctcgcgt 64
||||||||||||||||||||||
Sbjct: 39 gttttgttcgttcggctcgcgt 60
