miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;CAAA01088157.1/21210-21131 10090:Mus musculus
(house mouse)
Length = 80
Score = 159 bits (80), Expect = 7e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatggttacgtgcttcctggataatcatagagga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatggttacgtgcttcctggataatcatagagga 60
Query: 64 acatccactttttcagtatc 83
||||||||||||||||||||
Sbjct: 61 acatccactttttcagtatc 80
>RF00641;mir-154;AAGW01206553.1/1248-1327 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 95.6 bits (48), Expect = 9e-20
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatggttacgtgcttcctggataatcatagagga 63
|||||||||||||||||| ||||||||||| ||||||| || |||| |||||||||||||
Sbjct: 1 ggtatttaaaaggtggattttccttctatgtttacgtgattgctggttaatcatagagga 60
Query: 64 acatccactttttcagtatc 83
| ||||| |||||||||||
Sbjct: 61 aaatccatgttttcagtatc 80
>RF00641;mir-154;AAGW01206553.1/954-1033 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 87.7 bits (44), Expect = 2e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatggttacgtgcttcctggataatcatagagga 63
|||||||||||||| ||| ||||||| ||| ||||||| | ||||| |||||||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttcaatgattacgtgttgcctggttaatcatagagga 60
Query: 64 acatccactttttcagtatc 83
| |||||| |||||||||||
Sbjct: 61 aaatccacattttcagtatc 80
>RF00641;mir-154;AADB02234032.1/262-341 9606:Homo sapiens (human)
Length = 80
Score = 73.8 bits (37), Expect = 3e-13
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 23 ttccttctatggttacgtgcttcctggataatcatagaggaacatccactttttcagtat 82
||||||||||||||||||| || ||| |||||||||||||| |||||| ||||||||||
Sbjct: 20 ttccttctatggttacgtgtttgatggttaatcatagaggaaaatccacgttttcagtat 79
Query: 83 c 83
|
Sbjct: 80 c 80
>RF00641;mir-154;ABRQ01054372.1/1857-1937 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 73.8 bits (37), Expect = 3e-13
Identities = 71/81 (87%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatggtt-acgtgcttcctggataatcatagagg 62
|||||||||||||||||| ||||| ||||| || || |||||| ||| ||||||||||||
Sbjct: 1 ggtatttaaaaggtggattttcctcctatgttttacatgcttcgtggttaatcatagagg 60
Query: 63 aacatccactttttcagtatc 83
|| ||||| |||||||||||
Sbjct: 61 aaaatccatattttcagtatc 81
>RF00641;mir-154;ABRQ01054372.1/1100-1179 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 71.9 bits (36), Expect = 1e-12
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatggttacgtgcttcctggataatcatagagga 63
|||||||||||||||||||||||||||||| ||| || || ||| ||| |||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatgtttatgttatttatggttaaacatagagga 60
Query: 64 acatccactttttcagtatc 83
| ||||| |||||||||||
Sbjct: 61 aattccacattttcagtatc 80
>RF00641;mir-154;AAIY01443497.1/2027-2105 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 67.9 bits (34), Expect = 2e-11
Identities = 68/78 (87%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatggttacgtgcttcctggataatcatagagga 63
|||||||||||||| ||| |||||| ||||||||||| || ||| |||||||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttttatggttacgt-tttgatggttaatcatagagga 59
Query: 64 acatccactttttcagta 81
| |||||| |||||||||
Sbjct: 60 aaatccacgttttcagta 77
>RF00641;mir-154;AANN01196583.1/1560-1639 9365:Erinaceus europaeus
(western European hedgehog)
Length = 80
Score = 63.9 bits (32), Expect = 3e-10
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatggttacgtgcttcctggataatcatagagga 63
||||||||||||||||||||| |||||||| ||| | ||| ||| ||| | |||||||
Sbjct: 1 ggtatttaaaaggtggatatttcttctatgtttattggattcatggttaaacgtagagga 60
Query: 64 acatccactttttcagtatc 83
| |||||||||||||||||
Sbjct: 61 agttccactttttcagtatc 80
>RF00641;mir-154;AAYZ01424898.1/1376-1455 9978:Ochotona princeps
(American pika)
Length = 80
Score = 63.9 bits (32), Expect = 3e-10
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatggttacgtgcttcctggataatcatagagga 63
|||||||||||||||||| ||||||| ||| |||| || | ||| |||||||||||||
Sbjct: 1 ggtatttaaaaggtggattttccttccatgattacatgttgccttcttaatcatagagga 60
Query: 64 acatccactttttcagtatc 83
| ||||| |||||||||||
Sbjct: 61 aattccacgttttcagtatc 80
>RF00641;mir-154;AAQR01332677.1/6513-6587 30611:Otolemur garnettii
(small-eared galago)
Length = 75
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatg 33
||||||||||||||||||||||||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatg 30
>RF00641;mir-154;AANU01197805.1/77711-77790 9544:Macaca mulatta
(rhesus monkey)
Length = 80
Score = 60.0 bits (30), Expect = 5e-09
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 10 taaaaggtggatattccttctatggttacgtgcttcctggataatcatagaggaacatcc 69
|||||||||||| ||||||||||| |||| | || ||| |||||||||||||| ||||
Sbjct: 7 taaaaggtggatgttccttctatgcttacaggatttatggttaatcatagaggaaaatcc 66
Query: 70 actttttcagtatc 83
|| || ||||||||
Sbjct: 67 acattgtcagtatc 80
>RF00641;mir-154;ABDC01257673.1/7254-7333 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 11 aaaaggtggatattccttctatggttacgtgcttcctggataatcatagaggaacatcca 70
||||||||||| ||||||||||| |||| | || ||| |||||||||||||| |||||
Sbjct: 8 aaaaggtggatgttccttctatgtttacaggatttgtggttaatcatagaggaaaatcca 67
Query: 71 ctttttcag 79
| |||||||
Sbjct: 68 cattttcag 76
>RF00641;mir-154;AAFC03087120.1/1987-1908 9913:Bos taurus (cattle)
Length = 80
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 6 tatttaaaaggtggatattccttctatggttac 38
|||| ||||||||||||||||||||||| ||||
Sbjct: 3 tattcaaaaggtggatattccttctatgtttac 35
>RF00641;mir-154;ABRT010163748.1/957-1036 9478:Tarsius syrichta
(Philippine tarsier)
Length = 80
Score = 50.1 bits (25), Expect = 5e-06
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 11 aaaaggtggatattccttctatggttacgtgcttcctggataatcatagaggaacatcca 70
||||||||||||||||||||||| |||| || | | |||||||||||||| |||||
Sbjct: 8 aaaaggtggatattccttctatgtttacagaatttatagttaatcatagaggaaaatcca 67
Query: 71 ctttttcag 79
| |||||||
Sbjct: 68 cattttcag 76
>RF00641;mir-154;ABRQ01054372.1/2194-2273 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 51 taatcatagaggaacatccactttttcagtatc 83
|||||||||||||| |||||| |||||||||||
Sbjct: 48 taatcatagaggaaaatccacgttttcagtatc 80
>RF00641;mir-154;ABRQ01054372.1/730-809 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 aaaaggtggatattccttctatg 33
|||||||||||||||||||||||
Sbjct: 8 aaaaggtggatattccttctatg 30
>RF00641;mir-154;AAEX02019639.1/145777-145856 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 15 ggtggatattccttctatggttacgtgcttcctggataatcatagaggaacatccacttt 74
||||||| ||||||||||| ||||| | || | | |||||||||||||| |||||| ||
Sbjct: 12 ggtggatgttccttctatgtttacgggatttatagttaatcatagaggaaaatccacgtt 71
Query: 75 tt 76
||
Sbjct: 72 tt 73
>RF00641;mir-154;AAKN02051949.1/111080-111159 10141:Cavia
porcellus (domestic guinea pig)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatg 33
|||||||||||||||||| ||||| |||||
Sbjct: 1 ggtatttaaaaggtggattttcctcctatg 30
>RF00641;mir-154;AAGW01206553.1/392-471 9986:Oryctolagus cuniculus
(rabbit)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatg 33
|||||| ||||||||||| |||||||||||
Sbjct: 1 ggtattcaaaaggtggatgttccttctatg 30
