miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054372.1/1100-1179 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 121 bits (61), Expect = 1e-27
Identities = 73/77 (94%)
Strand = Plus / Plus
Query: 3 ggtatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagagga 62
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatgtttatgttatttatggttaaacatagagga 60
Query: 63 aatttcacgttttcagt 79
|||| ||| ||||||||
Sbjct: 61 aattccacattttcagt 77
>RF00641;mir-154;AANN01196583.1/1560-1639 9365:Erinaceus europaeus
(western European hedgehog)
Length = 80
Score = 81.8 bits (41), Expect = 1e-15
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 3 ggtatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagagga 62
||||||||||||||||||||| ||||||||||||| | ||| ||| |||||| |||||||
Sbjct: 1 ggtatttaaaaggtggatatttcttctatgtttattggattcatggttaaacgtagagga 60
Query: 63 aatttcacgttttcagt 79
| || ||| ||||||||
Sbjct: 61 agttccactttttcagt 77
>RF00641;mir-154;AAQR01332677.1/6513-6587 30611:Otolemur garnettii
(small-eared galago)
Length = 75
Score = 71.9 bits (36), Expect = 1e-12
Identities = 60/64 (93%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 3 ggtatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagagga 62
|||||||||||||||||||||||||||||| |||| ||||||||| || |||||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatg-ttat-gtatttatggtt-aacatagagga 57
Query: 63 aatt 66
||||
Sbjct: 58 aatt 61
>RF00641;mir-154;ABRT010163748.1/957-1036 9478:Tarsius syrichta
(Philippine tarsier)
Length = 80
Score = 65.9 bits (33), Expect = 7e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 10 aaaaggtggatattccttctatgtttatggtatttatgattaaacatagaggaaatttca 69
||||||||||||||||||||||||||| | |||||| |||| ||||||||||| | ||
Sbjct: 8 aaaaggtggatattccttctatgtttacagaatttatagttaatcatagaggaaaatcca 67
Query: 70 cgttttcag 78
| |||||||
Sbjct: 68 cattttcag 76
>RF00641;mir-154;AAGW01206553.1/1248-1327 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 65.9 bits (33), Expect = 7e-11
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 3 ggtatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagagga 62
|||||||||||||||||| ||||||||||||||| | ||| || |||| |||||||||
Sbjct: 1 ggtatttaaaaggtggattttccttctatgtttacgtgattgctggttaatcatagagga 60
Query: 63 aatttcacgttttcagt 79
|| | || |||||||||
Sbjct: 61 aaatccatgttttcagt 77
>RF00641;mir-154;ABRQ01054372.1/2194-2273 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 65.9 bits (33), Expect = 7e-11
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 3 ggtatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagagga 62
|||||||||||||| ||| |||||||||| || ||||||||||||| |||||||||
Sbjct: 1 ggtatttaaaaggtagattctccttctatgagtacattatttatgattaatcatagagga 60
Query: 63 aatttcacgttttcagt 79
|| | ||||||||||||
Sbjct: 61 aaatccacgttttcagt 77
>RF00641;mir-154;AAQR01332677.1/6164-6240 30611:Otolemur garnettii
(small-eared galago)
Length = 77
Score = 63.9 bits (32), Expect = 3e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 15 gtggatattccttctatgtttatggtatttatgattaaacatagaggaaatttcacgttt 74
|||||| ||||||||||||||| | ||||||| |||| ||||||||||| ||||| |||
Sbjct: 10 gtggatgttccttctatgtttacaggatttatggttaatcatagaggaaaattcacattt 69
Query: 75 tcagtgtc 82
| ||||||
Sbjct: 70 taagtgtc 77
>RF00641;mir-154;ABRQ01054372.1/730-809 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 61.9 bits (31), Expect = 1e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 10 aaaaggtggatattccttctatgtttatggtatttatga 48
||||||||||||||||||||||||||||| ||||||||
Sbjct: 8 aaaaggtggatattccttctatgtttatgtgatttatga 46
>RF00641;mir-154;AAEX02019639.1/145777-145856 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 60.0 bits (30), Expect = 5e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 14 ggtggatattccttctatgtttatggtatttatgattaaacatagaggaaatttcacgtt 73
||||||| ||||||||||||||| || |||||| |||| ||||||||||| | ||||||
Sbjct: 12 ggtggatgttccttctatgtttacgggatttatagttaatcatagaggaaaatccacgtt 71
Query: 74 tt 75
||
Sbjct: 72 tt 73
>RF00641;mir-154;CAAA01088157.1/21210-21131 10090:Mus musculus
(house mouse)
Length = 80
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 3 ggtatttaaaaggtggatattccttctatg 32
||||||||||||||||||||||||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatg 30
>RF00641;mir-154;ABDC01257673.1/7254-7333 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 10 aaaaggtggatattccttctatgtttatggtatttatgattaaacatagaggaaatttca 69
||||||||||| ||||||||||||||| | |||| || |||| ||||||||||| | ||
Sbjct: 8 aaaaggtggatgttccttctatgtttacaggatttgtggttaatcatagaggaaaatcca 67
Query: 70 cgttttcag 78
| |||||||
Sbjct: 68 cattttcag 76
>RF00641;mir-154;AAFC03087120.1/1987-1908 9913:Bos taurus (cattle)
Length = 80
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 5 tatttaaaaggtggatattccttctatgttta 36
|||| |||||||||||||||||||||||||||
Sbjct: 3 tattcaaaaggtggatattccttctatgttta 34
>RF00641;mir-154;AANU01197805.1/77711-77790 9544:Macaca mulatta
(rhesus monkey)
Length = 80
Score = 56.0 bits (28), Expect = 7e-08
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 9 taaaaggtggatattccttctatgtttatggtatttatgattaaacatagaggaaa 64
|||||||||||| ||||||||||| ||| | ||||||| |||| |||||||||||
Sbjct: 7 taaaaggtggatgttccttctatgcttacaggatttatggttaatcatagaggaaa 62
>RF00641;mir-154;ABRP01151523.1/16147-16226 132908:Pteropus
vampyrus (large flying fox)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 11 aaaggtggatattccttctatgtttatggtatttatgattaaacatagaggaaa 64
|||||||||| ||||||||||||||| | |||||| |||| |||||||||||
Sbjct: 9 aaaggtggattttccttctatgtttacagggtttatggttaagcatagaggaaa 62
>RF00641;mir-154;AAIY01443497.1/2027-2105 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 50.1 bits (25), Expect = 4e-06
Identities = 65/77 (84%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 3 ggtatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagagga 62
|||||||||||||| ||| |||||| |||| ||| | | || ||| |||| |||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttttatggttacgtt-ttgatggttaatcatagagga 59
Query: 63 aatttcacgttttcagt 79
|| | ||||||||||||
Sbjct: 60 aaatccacgttttcagt 76
>RF00641;mir-154;ABRQ01054372.1/1857-1937 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 3 ggtatttaaaaggtggatattccttctatgttt 35
|||||||||||||||||| ||||| ||||||||
Sbjct: 1 ggtatttaaaaggtggattttcctcctatgttt 33
>RF00641;mir-154;AAKN02051949.1/111080-111159 10141:Cavia
porcellus (domestic guinea pig)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 3 ggtatttaaaaggtggatattccttctatgtttatg 38
|||||||||||||||||| ||||| ||||| |||||
Sbjct: 1 ggtatttaaaaggtggattttcctcctatgattatg 36
>RF00641;mir-154;AANG01662501.1/383-463 9685:Felis catus (domestic
cat)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 63/75 (84%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 3 ggtatttaaaaggtggatattccttctatgtttatggtatttatga-ttaaacatagagg 61
|||||| | ||||||||| ||||||||||||||| || | ||| | |||| ||||||||
Sbjct: 1 ggtattcagaaggtggatgttccttctatgtttacgggacttaacagttaatcatagagg 60
Query: 62 aaatttcacgttttc 76
||| | |||||||||
Sbjct: 61 aaaatccacgttttc 75
>RF00641;mir-154;CABD01018504.1/18447-18522 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 76
Score = 46.1 bits (23), Expect = 7e-05
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 9 taaaaggtggatattccttctatgtttatggtatttatgattaaacatagaggaa 63
|||||||||||| ||||||||||| ||| | ||||||| |||| || |||||||
Sbjct: 6 taaaaggtggatgttccttctatgcttacaggatttatggttaatcacagaggaa 60
>RF00641;mir-154;AAYZ01424898.1/1376-1455 9978:Ochotona princeps
(American pika)
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 49 ttaaacatagaggaaatttcacgttttcagt 79
|||| ||||||||||||| ||||||||||||
Sbjct: 47 ttaatcatagaggaaattccacgttttcagt 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3 ggtatttaaaaggtggatattccttc 28
|||||||||||||||||| |||||||
Sbjct: 1 ggtatttaaaaggtggattttccttc 26
>RF00641;mir-154;AAGW01206553.1/392-471 9986:Oryctolagus cuniculus
(rabbit)
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 3 ggtatttaaaaggtggatattccttctatgt 33
|||||| ||||||||||| ||||||||||||
Sbjct: 1 ggtattcaaaaggtggatgttccttctatgt 31
