miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;ABRO01282771.1/6704-6628 10020:Dipodomys ordii (Ord's
kangaroo rat)
Length = 77
Score = 145 bits (73), Expect = 1e-34
Identities = 76/77 (98%)
Strand = Plus / Minus
Query: 24 ctggggaaagctaggaggccgtatagtgatctcctcgggtgtcttcctcaactatacaac 83
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 77 ctggggaaagctaggaggccgtatagtgatctccttgggtgtcttcctcaactatacaac 18
Query: 84 ctcctacctcagcccgg 100
|||||||||||||||||
Sbjct: 17 ctcctacctcagcccgg 1
>RF00027;let-7;ABRQ01276450.1/1153-1077 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 137 bits (69), Expect = 4e-32
Identities = 75/77 (97%)
Strand = Plus / Minus
Query: 24 ctggggaaagctaggaggccgtatagtgatctcctcgggtgtcttcctcaactatacaac 83
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 77 ctggggaaagctaggaggccgtatagtgatctccttgggtgtcctcctcaactatacaac 18
Query: 84 ctcctacctcagcccgg 100
|||||||||||||||||
Sbjct: 17 ctcctacctcagcccgg 1
>RF00027;let-7;BAAE01285721.1/657-581 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 56.0 bits (28), Expect = 1e-07
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 27 gggaaagctaggaggccgtatagtgatctcctcgggtgtcttcctcaactatacaacctc 86
|||||||||||||||| ||| ||| ||||||| |||||| || |||||||||||||
Sbjct: 74 gggaaagctaggaggctgtacagttatctcctgtggtgtcactctgaactatacaaccta 15
Query: 87 ctacctca 94
||||||||
Sbjct: 14 ctacctca 7
>RF00027;let-7;BAAE01198743.1/2195-2119 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 50.1 bits (25), Expect = 7e-06
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 30 aaagctaggaggccgtatagtgatctcctcgggtgtcttcctcaactatacaacctccta 89
|||||||||||| ||| ||| |||||| ||||||| | ||||||||||||||| |||
Sbjct: 71 aaagctaggaggttgtacagtcatctcccggggtgtcattctcaactatacaacccacta 12
Query: 90 cctca 94
|||||
Sbjct: 11 cctca 7
>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
Length = 77
Score = 48.1 bits (24), Expect = 3e-05
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 27 gggaaagctaggaggccgtatagtgatctcctcgggtgtcttcctcaactatacaacctc 86
||||||||||||||| ||| ||| ||||| |||||| | ||||||||||||||||
Sbjct: 74 gggaaagctaggaggttgtacagttatctctgggggtgtaattctcaactatacaaccta 15
Query: 87 ctacctca 94
||||||||
Sbjct: 14 ctacctca 7
>RF00027;let-7;AANH01000597.1/43752-43676 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 48.1 bits (24), Expect = 3e-05
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 27 gggaaagctaggaggccgtatagtgatctcctcgggtgtcttcctcaactatacaacctc 86
|||||||||||||||| ||| ||| ||||||| || ||| || |||||||||||||
Sbjct: 74 gggaaagctaggaggctgtacagtcatctcctgtggcgtcactctgaactatacaaccta 15
Query: 87 ctacctca 94
||||||||
Sbjct: 14 ctacctca 7
>RF00027;let-7;ABIR01000029.1/50721-50818 6334:Trichinella
spiralis
Length = 98
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 70 ctcaactatacaacctcctacctcag 95
|||||||||||||||| |||||||||
Sbjct: 31 ctcaactatacaacctactacctcag 6
