miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AADN02013953.1/13719-13633 9031:Gallus gallus
(chicken)
Length = 87
Score = 149 bits (75), Expect = 8e-36
Identities = 84/87 (96%)
Strand = Plus / Minus
Query: 6 tcagggaaggcaatagattgtatagttatctcctaaacagggtaaaatcactaccccaca 65
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||
Sbjct: 87 tcagggaaggcaatagattgtatagttatctcctgaacagggtaaaataactaccctaca 28
Query: 66 actatacaatctactacctcactctga 92
|||||||||||||||||||||||||||
Sbjct: 27 actatacaatctactacctcactctga 1
>RF00027;let-7;AANH01006181.1/186306-186220 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 129 bits (65), Expect = 7e-30
Identities = 77/81 (95%)
Strand = Plus / Minus
Query: 6 tcagggaaggcaatagattgtatagttatctcctaaacagggtaaaatcactaccccaca 65
||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| |
Sbjct: 87 tcagggaaggcaatagattgtatagttatcttccaaacagggcaaaatcactaccccaaa 28
Query: 66 actatacaatctactacctca 86
|||||||||||||||||||||
Sbjct: 27 actatacaatctactacctca 7
>RF00027;let-7;AAPN01191849.1/6200-6287 9258:Ornithorhynchus
anatinus (platypus)
Length = 88
Score = 101 bits (51), Expect = 2e-21
Identities = 79/87 (90%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 6 tcagggaaggcaatagattgtatagttatctcctaaacagggtaaaatcactaccc-cac 64
||||||||||||||||||||||||||||||||| || ||| |||||| ||||||| |
Sbjct: 88 tcagggaaggcaatagattgtatagttatctccggaaaaggataaaattactaccctaaa 29
Query: 65 aactatacaatctactacctcactctg 91
|||||||||||||||||||||||||||
Sbjct: 28 aactatacaatctactacctcactctg 2
>RF00027;let-7;AAVX01031590.1/1741-1655 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 67.9 bits (34), Expect = 2e-11
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 6 tcagggaaggcaatagattgtatagttatctcctaaacagggtaaaatcactaccccaca 65
|||||||||||| ||| ||||||||||||||||| | || ||||||||||||| |
Sbjct: 87 tcagggaaggcagtaggttgtatagttatctcctgatggggcaaaaatcactaccctgaa 28
Query: 66 actatacaatctactacctcactctg 91
|||| |||| ||||||||||||||||
Sbjct: 27 actacacaacctactacctcactctg 2
>RF00027;let-7;BX897734.11/94677-94763 7955:Danio rerio
(zebrafish)
Length = 87
Score = 60.0 bits (30), Expect = 6e-09
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 10 ggaaggcaatagattgtatagttatctcctaaacagggtaaaatcactaccccacaacta 69
||||||||||||| |||||||||||| ||| |||||||| ||| || || | |||||
Sbjct: 83 ggaaggcaatagactgtatagttatcacctgaacagggtttgatccctcccaccaaacta 24
Query: 70 tacaatctactacctcac 87
||||| ||||||||||||
Sbjct: 23 tacaacctactacctcac 6
>RF00027;let-7;BAAE01151389.1/288-202 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 56.0 bits (28), Expect = 9e-08
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 6 tcagggaaggcaatagattgtatagttatctcctaa 41
||||||||||||||||| |||||||||||| |||||
Sbjct: 87 tcagggaaggcaatagactgtatagttatcacctaa 52
>RF00027;let-7;AAGU02300353.1/1892-1804 9785:Loxodonta africana
(African savanna elephant)
Length = 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 48 taaaatcactaccccacaactatacaatctactacctcactc 89
||||||| |||||||||||| |||||| |||||||||||||
Sbjct: 45 taaaatccctaccccacaacaatacaacttactacctcactc 4
>RF00027;let-7;CR847944.11/44965-45050 7955:Danio rerio
(zebrafish)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 6 tcagggaaggcaatagattgtatagttatc 35
||||||||||||||||| ||||||||||||
Sbjct: 86 tcagggaaggcaatagactgtatagttatc 57
>RF00027;let-7;AANH01001398.1/49056-49141 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 69/82 (84%), Gaps = 1/82 (1%)
Strand = Plus / Minus
Query: 6 tcagggaaggcaatagattgtatagttatctcctaaacagggtaaaatcactaccccaca 65
|||||||||||| || |||||||||||||| || | | ||| |||||||||||||| |
Sbjct: 86 tcagggaaggcagtatgttgtatagttatcttctgatc-gggcaaaatcactaccccgaa 28
Query: 66 actatacaatctactacctcac 87
|| | |||| ||||||||||||
Sbjct: 27 accacacaacctactacctcac 6
>RF00027;let-7;AAPN01367903.1/288-368 9258:Ornithorhynchus
anatinus (platypus)
Length = 81
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 58 accccacaactatacaatctactacctca 86
||||||||||||| |||||||||||||||
Sbjct: 35 accccacaactattcaatctactacctca 7
>RF00027;let-7;CAAB01006742.1/7725-7806 31033:Takifugu rubripes
Length = 82
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 58 accccacaactatacaatctactacctca 86
||||||||||||| |||||||||||||||
Sbjct: 35 accccacaactattcaatctactacctca 7
>RF00027;let-7;ABPM01013261.1/416-335 106582:Maylandia zebra
(zebra mbuna)
Length = 82
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 58 accccacaactatacaatctactacctca 86
||||||||||||| |||||||||||||||
Sbjct: 35 accccacaactattcaatctactacctca 7
>RF00027;let-7;AANH01002639.1/21280-21198 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 58 accccacaactatacaatctactacctca 86
||||||||||||| |||||||||||||||
Sbjct: 35 accccacaactattcaatctactacctca 7
>RF00027;let-7;BAAF04096587.1/14346-14265 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 58 accccacaactatacaatctactacctca 86
||||||||||||| |||||||||||||||
Sbjct: 35 accccacaactattcaatctactacctca 7
>RF00027;let-7;BAAF04002563.1/3069-3152 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 58 accccacaactatacaatctactacctca 86
||||||||||||| |||||||||||||||
Sbjct: 35 accccacaactattcaatctactacctca 7
>RF00027;let-7;AAVX01156403.1/1100-1020 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 62 cacaactatacaatctactacctca 86
|||||||||||||||||||||||||
Sbjct: 31 cacaactatacaatctactacctca 7
>RF00027;let-7;AAQR01020418.1/249-164 30611:Otolemur garnettii
(small-eared galago)
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 6 tcagggaaggcaatagattgtatagttatct 36
|||||||||||| ||| ||||||||||||||
Sbjct: 86 tcagggaaggcagtaggttgtatagttatct 56
>RF00027;let-7;ABQF01051678.1/9631-9544 59729:Taeniopygia guttata
Length = 88
Score = 46.1 bits (23), Expect = 8e-05
Identities = 66/79 (83%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 10 ggaaggcaatagattgtatagttatctcct-aaacagggtaaaatcactaccccacaact 68
||||||||||||| |||||||||||| ||| ||| || | ||||| || || | ||||
Sbjct: 84 ggaaggcaatagactgtatagttatcacctgaaatgggatcaaatccctcccaccaaact 25
Query: 69 atacaatctactacctcac 87
|||||| ||||||||||||
Sbjct: 24 atacaacctactacctcac 6
>RF00027;let-7;CAAB01000053.1/115251-115164 31033:Takifugu
rubripes
Length = 88
Score = 46.1 bits (23), Expect = 8e-05
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 10 ggaaggcaatagattgtatagttatctcctaaacagggt 48
|||||||| || ||||||||||||||||| ||||||||
Sbjct: 84 ggaaggcagtaagttgtatagttatctcctgaacagggt 46
>RF00027;let-7;ABRQ01114152.1/454-374 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 65 aactatacaatctactacctca 86
||||||||||||||||||||||
Sbjct: 28 aactatacaatctactacctca 7
>RF00027;let-7;AAWZ01028874.1/2440-2520 28377:Anolis carolinensis
(green anole)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 65 aactatacaatctactacctca 86
||||||||||||||||||||||
Sbjct: 28 aactatacaatctactacctca 7
>RF00027;let-7;AAWZ01027397.1/1152-1066 28377:Anolis carolinensis
(green anole)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 10 ggaaggcaatagattgtatagttatctcct 39
|||||||| ||| |||||||||||||||||
Sbjct: 83 ggaaggcagtaggttgtatagttatctcct 54
>RF00027;let-7;AAWZ01028874.1/2915-3002 28377:Anolis carolinensis
(green anole)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 50 aaatcactaccccacaactatacaatctactacctcac 87
||||| |||||||||||| |||||| |||||||||||
Sbjct: 43 aaatccctaccccacaacaatacaacttactacctcac 6
>RF00027;let-7;AADN02044881.1/4561-4474 9031:Gallus gallus
(chicken)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ggaaggcaatagattgtatagttatc 35
||||||||||||| ||||||||||||
Sbjct: 84 ggaaggcaatagactgtatagttatc 59
>RF00027;let-7;CR847944.11/44347-44429 7955:Danio rerio
(zebrafish)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 61 ccacaactatacaatctactacctca 86
|||||||||| |||||||||||||||
Sbjct: 32 ccacaactattcaatctactacctca 7
>RF00027;let-7;CR936540.12/43970-44052 7955:Danio rerio
(zebrafish)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 61 ccacaactatacaatctactacctca 86
|||||||||| |||||||||||||||
Sbjct: 32 ccacaactattcaatctactacctca 7
>RF00027;let-7;BX664745.13/143600-143510 7955:Danio rerio
(zebrafish)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 10 ggaaggcaatagattgtatagttatctcct 39
|||||||| || ||||||||||||||||||
Sbjct: 87 ggaaggcagtaaattgtatagttatctcct 58
>RF00027;let-7;CAAB01000128.1/27883-27800 31033:Takifugu rubripes
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ggaaggcaatagattgtatagttatc 35
||||||||||||| ||||||||||||
Sbjct: 80 ggaaggcaatagactgtatagttatc 55
