miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00254;mir-16;ABRQ01105896.1/793-873 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 153 bits (77), Expect = 4e-37
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 5 gcagtgccttagcagcacgtaaatattggtgttaagattctaaaattatctccagtatta 64
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 gcagtgccttagcagcacgtaaatattggagttaagattctaaaattatctccagtatta 60
Query: 65 actgtgctgctgaagtaaggt 85
|||||||||||||||||||||
Sbjct: 61 actgtgctgctgaagtaaggt 81
>RF00254;mir-16;AANN01638158.1/2837-2759 9365:Erinaceus europaeus
(western European hedgehog)
Length = 79
Score = 105 bits (53), Expect = 9e-23
Identities = 76/81 (93%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 5 gcagtgccttagcagcacgtaaatattggtgttaagattctaaaattatctccagtatta 64
||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 1 gcagtgctttagcagcacgtaaatattggtgttaa-attctaag-ttatctccagtattg 58
Query: 65 actgtgctgctgaagtaaggt 85
|||||||||||||||||||||
Sbjct: 59 actgtgctgctgaagtaaggt 79
>RF00254;mir-16;AADN02005381.1/19775-19853 9031:Gallus gallus
(chicken)
Length = 79
Score = 95.6 bits (48), Expect = 9e-20
Identities = 66/71 (92%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaagattctaaaattatctccagtattaactgtgctg 73
|||||||||||||||||||||||||| | | |||| |||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggtgttaaaactgtaaa--tatctccagtattaactgtgctg 67
Query: 74 ctgaagtaagg 84
|||||||||||
Sbjct: 68 ctgaagtaagg 78
>RF00254;mir-16;AAVX01075355.1/994-914 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 5 gcagtgccttagcagcacgtaaatattggtgtta 38
||||||| ||||||||||||||||||||| ||||
Sbjct: 1 gcagtgctttagcagcacgtaaatattggagtta 34
>RF00254;mir-16;CR478286.10/109802-109722 7955:Danio rerio
(zebrafish)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 ttagcagcacgtaaatattggtgt 36
||||||||||||||||||||||||
Sbjct: 9 ttagcagcacgtaaatattggtgt 32
>RF00254;mir-16;CAAB01000783.1/48863-48783 31033:Takifugu rubripes
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 ttagcagcacgtaaatattggtgt 36
||||||||||||||||||||||||
Sbjct: 9 ttagcagcacgtaaatattggtgt 32
>RF00254;mir-16;AANH01005347.1/82242-82163 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaaga 41
|||||||||||||||||||| |||||||
Sbjct: 10 tagcagcacgtaaatattggagttaaga 37
>RF00254;mir-16;AAPN01094471.1/3343-3419 9258:Ornithorhynchus
anatinus (platypus)
Length = 77
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgt 36
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggtgt 32
>RF00254;mir-16;AADN02021066.1/63731-63651 9031:Gallus gallus
(chicken)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgt 36
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggtgt 32
>RF00254;mir-16;CAAB01000586.1/28233-28314 31033:Takifugu rubripes
Length = 82
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaag 40
|||||||||||||||||||| ||||||
Sbjct: 10 tagcagcacgtaaatattggagttaag 36
>RF00254;mir-16;ABPK01051643.1/651-732 57307:Labeotropheus
fuelleborni
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaa 39
|||||||||||||||||||| |||||
Sbjct: 10 tagcagcacgtaaatattggagttaa 35
