miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00254;mir-16;ABRQ01058087.1/3558-3638 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 137 bits (69), Expect = 3e-32
Identities = 78/81 (96%)
Strand = Plus / Plus
Query: 8 gttccgctgtagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatatt 67
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttccactctagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatatt 60
Query: 68 attgtgctgctttagcgtgac 88
||||||||||||||| |||||
Sbjct: 61 attgtgctgctttagtgtgac 81
>RF00254;mir-16;AADN02021066.1/63731-63651 9031:Gallus gallus
(chicken)
Length = 81
Score = 101 bits (51), Expect = 2e-21
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 8 gttccgctgtagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatatt 67
||||||| |||||||||||||||||||| ||||||||||||| |||||| ||||||||
Sbjct: 1 gttccgccctagcagcacgtaaatattggtgtagtaaaataaaccttaaaccccaatatt 60
Query: 68 attgtgctgctttagcgtg 86
|||||||||||| ||||||
Sbjct: 61 attgtgctgcttaagcgtg 79
>RF00254;mir-16;AAPN01094471.1/3343-3419 9258:Ornithorhynchus
anatinus (platypus)
Length = 77
Score = 69.9 bits (35), Expect = 5e-12
Identities = 66/76 (86%), Gaps = 4/76 (5%)
Strand = Plus / Plus
Query: 12 cgctgtagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattattg 71
|||| |||||||||||||||||||| ||||| || | |||||| ||||||||||||
Sbjct: 5 cgctctagcagcacgtaaatattggtgtagtgaagtc----ttaaaccccaatattattg 60
Query: 72 tgctgctttagcgtga 87
||||||||||||||||
Sbjct: 61 tgctgctttagcgtga 76
>RF00254;mir-16;ABQF01022934.1/40019-40098 59729:Taeniopygia
guttata
Length = 80
Score = 61.9 bits (31), Expect = 1e-09
Identities = 68/79 (86%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 8 gttccgctgtagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatatt 67
||||||| |||||||||||||||||||| || || ||| ||| || ||| ||||||||
Sbjct: 1 gttccgccctagcagcacgtaaatattggagt-gtcaaagaaaccttcaaccccaatatt 59
Query: 68 attgtgctgctttagcgtg 86
|||||||||||| ||||||
Sbjct: 60 attgtgctgcttcagcgtg 78
>RF00254;mir-16;ABQO011210750.1/1431-1352 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 56.0 bits (28), Expect = 8e-08
Identities = 65/76 (85%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 11 ccgctgtagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattatt 70
||||| ||||||||||||||||||||||| || | || | | | ||| |||||||||||
Sbjct: 4 ccgctctagcagcacgtaaatattggcgtcgtgagat-actggtgaaccccaatattatt 62
Query: 71 gtgctgctttagcgtg 86
||||||||| ||||||
Sbjct: 63 gtgctgcttcagcgtg 78
>RF00254;mir-16;AAIY01049521.1/711-785 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 75
Score = 56.0 bits (28), Expect = 8e-08
Identities = 56/64 (87%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 18 agcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattattgtgctgc 77
||||||| |||||| |||| |||| ||||||||| ||| || |||||||||||||||||
Sbjct: 8 agcagcatataaatactggcatagtgaaataaatactaa-catcaatattattgtgctgc 66
Query: 78 ttta 81
||||
Sbjct: 67 ttta 70
>RF00254;mir-16;BAAF04019869.1/1288-1368 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 12 cgctgtagcagcacgtaaatattggcgt 39
||||||||||||||||||||||||||||
Sbjct: 5 cgctgtagcagcacgtaaatattggcgt 32
>RF00254;mir-16;AAPY01269253.1/1011-1090 37347:Tupaia belangeri
(northern tree shrew)
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 66/75 (88%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 8 gttccgctgtagcagcacgta-aatattggcgtagtaaaataaatattaaacaccaatat 66
||||| || |||||||||||| |||| ||| | ||| |||||| |||||||||||| |||
Sbjct: 1 gttccactctagcagcacgtacaataatggggaagtgaaataa-tattaaacacca-tat 58
Query: 67 tattgtgctgcttta 81
|||||||||||||||
Sbjct: 59 tattgtgctgcttta 73
>RF00254;mir-16;FP016183.6/26569-26489 7955:Danio rerio
(zebrafish)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 gctgtagcagcacgtaaatattgg 36
||||||||||||||||||||||||
Sbjct: 6 gctgtagcagcacgtaaatattgg 29
>RF00254;mir-16;CAAB01000586.1/28233-28314 31033:Takifugu rubripes
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 gctgtagcagcacgtaaatattgg 36
||||||||||||||||||||||||
Sbjct: 6 gctgtagcagcacgtaaatattgg 29
>RF00254;mir-16;ABPK01051643.1/651-732 57307:Labeotropheus
fuelleborni
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 ctgtagcagcacgtaaatattgg 36
|||||||||||||||||||||||
Sbjct: 7 ctgtagcagcacgtaaatattgg 29
>RF00254;mir-16;AANH01005347.1/82242-82163 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 80
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 ctgtagcagcacgtaaatattgg 36
|||||||||||||||||||||||
Sbjct: 7 ctgtagcagcacgtaaatattgg 29
>RF00254;mir-16;AAVX01576107.1/322-406 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggcgt 32
