miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00051;mir-17;FP015951.3/28915-28833 9823:Sus scrofa (pig)
Length = 83
Score = 97.6 bits (49), Expect = 2e-20
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 1 agtaccaaagtgctcacagtgcaggtagttttggcagcgctctactgtagtgtgggcact 60
|||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct: 8 agtaccaaagtgctcacagtgcaggtaggttttgcattactctactgtagtgtgggcact 67
Query: 61 tccagtact 69
|||||||||
Sbjct: 68 tccagtact 76
>RF00051;mir-17;AY866359.1/938-1020 9593:Gorilla gorilla (Western
Gorilla)
Length = 83
Score = 89.7 bits (45), Expect = 4e-18
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 1 agtaccaaagtgctcacagtgcaggtagttttggcagcgctctactgtagtgtgggcact 60
|||||||||||||||| ||||||||||||||||||| |||||||||| | ||||||||
Sbjct: 8 agtaccaaagtgctcatagtgcaggtagttttggcatgactctactgtaatatgggcact 67
Query: 61 tccagtact 69
|||||||||
Sbjct: 68 tccagtact 76
>RF00051;mir-17;ABRO01259691.1/1321-1238 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 84
Score = 83.8 bits (42), Expect = 2e-16
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 agtaccaaagtgctcacagtgcaggtagttttgg-cagcgctctactgtagtgtgggcac 59
|||||||||||||||| |||||| |||||||||| || ||||||||||||| |||||||
Sbjct: 8 agtaccaaagtgctcatagtgcacgtagttttgggcattgctctactgtagtatgggcac 67
Query: 60 ttccagtact 69
||||||||||
Sbjct: 68 ttccagtact 77
>RF00051;mir-17;AAEX02004024.1/7928-8010 9615:Canis lupus
familiaris (dog)
Length = 83
Score = 75.8 bits (38), Expect = 6e-14
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 2 gtaccaaagtgctcacagtgcaggtagttttggcagcgctctactgtagtgtgggcactt 61
|||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct: 9 gtaccaaagtgctcacagtgcaggtagtctgggcttttctctactgtagtgtgggcactt 68
Query: 62 cc 63
||
Sbjct: 69 cc 70
>RF00051;mir-17;AAGW01169230.1/2042-2124 9986:Oryctolagus
cuniculus (rabbit)
Length = 83
Score = 73.8 bits (37), Expect = 2e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 1 agtaccaaagtgctcacagtgcaggtagttttggcagcgctctactgtagtgtgggcact 60
|||||||||||||||| ||||||||||||| | ||| | |||||||||||||| |||||
Sbjct: 8 agtaccaaagtgctcatagtgcaggtagttctagcatcattctactgtagtgtgagcact 67
Query: 61 tccagtact 69
|| ||||||
Sbjct: 68 tctagtact 76
>RF00051;mir-17;ABRQ01318667.1/1268-1186 9813:Procavia capensis
(cape rock hyrax)
Length = 83
Score = 65.9 bits (33), Expect = 6e-11
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 1 agtaccaaagtgctcacagtgcaggtagttttggcagcgctctactgtagtgtgggcact 60
|||||||||||||||| |||||||||||||| |||| |||||||| |||| |||||||
Sbjct: 8 agtaccaaagtgctcatagtgcaggtagtttgggcattactctactgcagtgcgggcact 67
Query: 61 t 61
|
Sbjct: 68 t 68
>RF00051;mir-17;AABR04092601.1/7810-7728 10116:Rattus norvegicus
(Norway rat)
Length = 83
Score = 60.0 bits (30), Expect = 4e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 5 ccaaagtgctcacagtgcaggtagttttggcagcgctctactgtagtgtgggcacttc 62
|||||||||||| ||||||||||| ||| || || |||||||| |||||| |||||||
Sbjct: 12 ccaaagtgctcatagtgcaggtaggttttgctgcactctactgcagtgtgagcacttc 69
>RF00051;mir-17;BX571778.7/42610-42528 10090:Mus musculus (house
mouse)
Length = 83
Score = 58.0 bits (29), Expect = 1e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 5 ccaaagtgctcacagtgcaggtagttttggcagcgctctactgtagtgtgggcacttcca 64
|||||||||||| ||||||||||||||| | | |||||||| |||||| ||||||| |
Sbjct: 12 ccaaagtgctcatagtgcaggtagtttttataccactctactgcagtgtgagcacttcta 71
Query: 65 gtact 69
|||||
Sbjct: 72 gtact 76
>RF00051;mir-17;AAPN01018584.1/1896-1981 9258:Ornithorhynchus
anatinus (platypus)
Length = 86
Score = 56.0 bits (28), Expect = 6e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 agtaccaaagtgctcacagtgcaggtagtttt 32
|||||||||||||||| |||||||||||||||
Sbjct: 8 agtaccaaagtgctcatagtgcaggtagtttt 39
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 41 tctactgtagtgtgggcacttccagtact 69
||||||||| ||||||||||| |||||||
Sbjct: 51 tctactgtaatgtgggcacttacagtact 79
>RF00051;mir-17;AAIY01238597.1/3382-3300 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 83
Score = 56.0 bits (28), Expect = 6e-08
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 2 gtaccaaagtgctcacagtgcaggtagttttggcagcgctctactgtagtgtgggcactt 61
||||||||||||||| ||||||||||||||| | ||||||||| || |||||||||
Sbjct: 9 gtaccaaagtgctcatagtgcaggtagtttttatattgctctactgcggtatgggcactt 68
Query: 62 ccagtact 69
|||||||
Sbjct: 69 tcagtact 76
>RF00051;mir-17;BX511227.7/25357-25277 7955:Danio rerio
(zebrafish)
Length = 81
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 ccaaagtgctcacagtgcaggtagt 29
|||||||||||||||||||||||||
Sbjct: 12 ccaaagtgctcacagtgcaggtagt 36
>RF00051;mir-17;AAFR03056382.1/2050-2132 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 ccaaagtgctcacagtgcaggtagtttt 32
|||||||||||| |||||||||||||||
Sbjct: 12 ccaaagtgctcatagtgcaggtagtttt 39
>RF00051;mir-17;AANH01005996.1/21109-21189 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 ccaaagtgctcacagtgcaggtag 28
||||||||||||||||||||||||
Sbjct: 12 ccaaagtgctcacagtgcaggtag 35
>RF00051;mir-17;AANH01005312.1/96166-96086 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 caaagtgctcacagtgcaggtagtttt 32
||||||||| |||||||||||||||||
Sbjct: 13 caaagtgcttacagtgcaggtagtttt 39
>RF00051;mir-17;BAAF04019480.1/14298-14217 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 caaagtgctcacagtgcaggtagtttt 32
||||||||| |||||||||||||||||
Sbjct: 13 caaagtgcttacagtgcaggtagtttt 39
>RF00051;mir-17;ABRQ01318668.1/84-4 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 7 aaagtgctcacagtgcaggtagtttt 32
|||||||| |||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagtttt 39
>RF00051;mir-17;CAAB01003114.1/25632-25550 31033:Takifugu rubripes
Length = 83
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 5 ccaaagtgctcacagtgcaggtagtt 30
|||||||||| |||||||||||||||
Sbjct: 12 ccaaagtgcttacagtgcaggtagtt 37
>RF00051;mir-17;CAAB01000095.1/5425-5345 31033:Takifugu rubripes
Length = 81
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 caaagtgctcacagtgcaggtagttt 31
||||||||| ||||||||||||||||
Sbjct: 13 caaagtgcttacagtgcaggtagttt 38
>RF00051;mir-17;AAWZ01041388.1/821-905 28377:Anolis carolinensis
(green anole)
Length = 85
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 caaagtgctcacagtgcaggtagtt 30
||||||||||| |||||||||||||
Sbjct: 13 caaagtgctcatagtgcaggtagtt 37
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 41 tctactgtagtgtgggcacttccagtact 69
||||||||| ||||||||||| |||||||
Sbjct: 50 tctactgtaatgtgggcacttacagtact 78
>RF00051;mir-17;CAAK05051440.1/16292-16212 7955:Danio rerio
(zebrafish)
Length = 81
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 caaagtgctcacagtgcaggtagtt 30
||||||||| |||||||||||||||
Sbjct: 13 caaagtgcttacagtgcaggtagtt 37
