miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00178;mir-24;ABRQ01065900.1/2864-2931 9813:Procavia capensis
          (cape rock hyrax)
          Length = 68

 Score =  115 bits (58), Expect = 7e-26
 Identities = 64/66 (96%)
 Strand = Plus / Plus

                                                                      
Query: 7  ctcccgtgcctactgagctgaaacacagttgatttgtgcacactggctcagttcagcagg 66
          |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1  ctcctgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcagg 60

                
Query: 67 aacagg 72
          ||||||
Sbjct: 61 aacagg 66




>RF00178;mir-24;ABRO01400204.1/704-771 10020:Dipodomys ordii
          (Ord's kangaroo rat)
          Length = 68

 Score = 99.6 bits (50), Expect = 4e-21
 Identities = 62/66 (93%)
 Strand = Plus / Plus

                                                                      
Query: 7  ctcccgtgcctactgagctgaaacacagttgatttgtgcacactggctcagttcagcagg 66
          ||||||||||||||||||||||||||||||| ||||  | ||||||||||||||||||||
Sbjct: 1  ctcccgtgcctactgagctgaaacacagttggtttgatcgcactggctcagttcagcagg 60

                
Query: 67 aacagg 72
          ||||||
Sbjct: 61 aacagg 66




>RF00178;mir-24;AAPY01721327.1/524-457 37347:Tupaia belangeri
          (northern tree shrew)
          Length = 68

 Score = 75.8 bits (38), Expect = 6e-14
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                      
Query: 7  ctcccgtgcctactgagctgaaacacagttgatttgtgcacactggctcagttcagcagg 66
          |||||| |||||| ||||||| ||||| ||| ||||| || |||||||||||||||||||
Sbjct: 1  ctcccgcgcctaccgagctgacacacacttggtttgtacagactggctcagttcagcagg 60

                
Query: 67 aacagg 72
          ||||||
Sbjct: 61 aacagg 66




>RF00178;mir-24;AAWZ01000886.1/15313-15246 28377:Anolis
          carolinensis (green anole)
          Length = 68

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                      
Query: 10 ccgtgcctactgagctgaaacacagttgatttgtgcacactggctcagttcagcaggaac 69
          |||||||||||||||||| || |||||| |||    | ||||||||||||||||||||||
Sbjct: 4  ccgtgcctactgagctgatactcagttgctttagataaactggctcagttcagcaggaac 63

             
Query: 70 agg 72
          |||
Sbjct: 64 agg 66




>RF00178;mir-24;AAKN02038501.1/43560-43494 10141:Cavia porcellus
          (domestic guinea pig)
          Length = 67

 Score = 60.0 bits (30), Expect = 4e-09
 Identities = 58/66 (87%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                      
Query: 7  ctcccgtgcctactgagctgaaacacagttgatttgtgcacactggctcagttcagcagg 66
          |||| |||||||||||||||| |  |||||   |||| ||||||||||||||||||||||
Sbjct: 1  ctccggtgcctactgagctgatat-cagttctcttgtacacactggctcagttcagcagg 59

                
Query: 67 aacagg 72
          ||||||
Sbjct: 60 aacagg 65




>RF00178;mir-24;AAVX01198958.1/114-181 7868:Callorhinchus milii
          (ghost shark)
          Length = 68

 Score = 60.0 bits (30), Expect = 4e-09
 Identities = 56/62 (90%), Gaps = 2/62 (3%)
 Strand = Plus / Plus

                                                                      
Query: 12 gtgcctactgagctgaaacacagttgat-ttgtgcacactggctcagttcagcaggaaca 70
          |||||||||||||||| | ||||||||| ||||   ||||||||||||||||||||||||
Sbjct: 6  gtgcctactgagctgata-acagttgatattgtttgcactggctcagttcagcaggaaca 64

            
Query: 71 gg 72
          ||
Sbjct: 65 gg 66




>RF00178;mir-24;CR847548.8/141549-141614 7955:Danio rerio
          (zebrafish)
          Length = 66

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 46 acactggctcagttcagcaggaacagg 72
          |||||||||||||||||||||||||||
Sbjct: 38 acactggctcagttcagcaggaacagg 64



 Score = 42.1 bits (21), Expect = 9e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 7  ctcccgtgcctactgagctga 27
          |||||||||||||||||||||
Sbjct: 1  ctcccgtgcctactgagctga 21




>RF00178;mir-24;CT027840.6/8959-9024 7955:Danio rerio (zebrafish)
          Length = 66

 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 47 cactggctcagttcagcaggaacagg 72
          ||||||||||||||||||||||||||
Sbjct: 39 cactggctcagttcagcaggaacagg 64




>RF00178;mir-24;BAAF04040483.1/10387-10453 8090:Oryzias latipes
          (Japanese medaka)
          Length = 67

 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 47 cactggctcagttcagcaggaacagg 72
          ||||||||||||||||||||||||||
Sbjct: 40 cactggctcagttcagcaggaacagg 65




>RF00178;mir-24;AADN02067827.1/6632-6699 9031:Gallus gallus
          (chicken)
          Length = 68

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 48 actggctcagttcagcaggaacagg 72
          |||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacagg 66




>RF00178;mir-24;CU138547.13/98214-98280 7955:Danio rerio
          (zebrafish)
          Length = 67

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 48 actggctcagttcagcaggaacagg 72
          |||||||||||||||||||||||||
Sbjct: 41 actggctcagttcagcaggaacagg 65




>RF00178;mir-24;BAAF04082680.1/2546-2479 8090:Oryzias latipes
          (Japanese medaka)
          Length = 68

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 48 actggctcagttcagcaggaacagg 72
          |||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacagg 66




>RF00178;mir-24;AANN01357153.1/1098-1031 9365:Erinaceus europaeus
          (western European hedgehog)
          Length = 68

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 50/56 (89%), Gaps = 2/56 (3%)
 Strand = Plus / Plus

                                                                  
Query: 15 cctactgagctgaaacacagttgatttg-tgcacactggctcagttcagcaggaac 69
          |||||||| |||||||||||||  |||  |||| ||||||||||||||||||||||
Sbjct: 9  cctactgaactgaaacacagtttttttcatgca-actggctcagttcagcaggaac 63




>RF00178;mir-24;CU855875.13/13048-13115 7955:Danio rerio
          (zebrafish)
          Length = 68

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 49 ctggctcagttcagcaggaacagg 72
          ||||||||||||||||||||||||
Sbjct: 43 ctggctcagttcagcaggaacagg 66




>RF00178;mir-24;CAAB01008725.1/106-172 31033:Takifugu rubripes
          Length = 67

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 46 acactggctcagttcagcaggaac 69
          ||||||||||||||||||||||||
Sbjct: 39 acactggctcagttcagcaggaac 62




>RF00178;mir-24;AANH01005378.1/80152-80082 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 71

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 46 acactggctcagttcagcaggaac 69
          ||||||||||||||||||||||||
Sbjct: 43 acactggctcagttcagcaggaac 66




>RF00178;mir-24;BAAE01102385.1/1423-1489 8090:Oryzias latipes
          (Japanese medaka)
          Length = 67

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 49 ctggctcagttcagcaggaacagg 72
          ||||||||||||||||||||||||
Sbjct: 42 ctggctcagttcagcaggaacagg 65




>RF00178;mir-24;BAAF04038250.1/1131-1201 8090:Oryzias latipes
          (Japanese medaka)
          Length = 71

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 48 actggctcagttcagcaggaac 69
          ||||||||||||||||||||||
Sbjct: 45 actggctcagttcagcaggaac 66