miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00244;mir-26;AAIY01565150.1/1351-1424 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 74
Score = 125 bits (63), Expect = 1e-28
Identities = 66/67 (98%)
Strand = Plus / Minus
Query: 17 tgcaagtaaccgagaataggccccttgggacctgcacagcctatcctggattacttgaac 76
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 67 tgcaagtaaccgagaataggcccattgggacctgcacagcctatcctggattacttgaac 8
Query: 77 gaggcca 83
|||||||
Sbjct: 7 gaggcca 1
>RF00244;mir-26;ABRQ01183794.1/1462-1535 9813:Procavia capensis
(cape rock hyrax)
Length = 74
Score = 60.0 bits (30), Expect = 5e-09
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 22 gtaaccgagaataggccccttgggacctgcacagcctatcctggattacttgaacgaggc 81
|||||| |||| |||||| ||||||| |||||||| |||||||||||||||||| |||
Sbjct: 62 gtaaccaagaacaggcccgctgggacccacacagcctgtcctggattacttgaacgcggc 3
Query: 82 ca 83
||
Sbjct: 2 ca 1
>RF00244;mir-26;AAPN01398538.1/2438-2512 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 51 cacagcctatcctggattacttgaac 76
||||||||||||||||||||||||||
Sbjct: 33 cacagcctatcctggattacttgaac 8
>RF00244;mir-26;AAFR03065617.1/19793-19721 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 73
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 51 cacagcctatcctggattacttgaac 76
||||||||||||||||||||||||||
Sbjct: 33 cacagcctatcctggattacttgaac 8
>RF00244;mir-26;AAWZ01020482.1/55030-55104 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 52 acagcctatcctggattacttgaacgaggc 81
||||||||||||||||||||||||| ||||
Sbjct: 32 acagcctatcctggattacttgaaccaggc 3
>RF00244;mir-26;BX322540.5/61735-61662 7955:Danio rerio
(zebrafish)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 54 agcctatcctggattacttgaacgaggcca 83
||||||||||||||||||||||| ||||||
Sbjct: 30 agcctatcctggattacttgaaccaggcca 1
>RF00244;mir-26;CAAE01014542.1/1090180-1090107 99883:Tetraodon
nigroviridis
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 51 cacagcctatcctggattacttgaac 76
||||||||||||||||||||||||||
Sbjct: 33 cacagcctatcctggattacttgaac 8
>RF00244;mir-26;CAAB01005025.1/9613-9686 31033:Takifugu rubripes
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 53 cagcctatcctggattacttgaacgaggcc 82
|||||||||||||||||||||||| |||||
Sbjct: 31 cagcctatcctggattacttgaaccaggcc 2
>RF00244;mir-26;AANH01008588.1/20720-20793 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 51 cacagcctatcctggattacttgaac 76
||||||||||||||||||||||||||
Sbjct: 33 cacagcctatcctggattacttgaac 8
>RF00244;mir-26;AAVX01037532.1/3546-3619 7868:Callorhinchus milii
(ghost shark)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 51 cacagcctatcctggattacttgaac 76
||||||||||||||||||||||||||
Sbjct: 33 cacagcctatcctggattacttgaac 8
>RF00244;mir-26;AAPN01108773.1/2160-2090 9258:Ornithorhynchus
anatinus (platypus)
Length = 71
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 52 acagcctatcctggattacttgaac 76
|||||||||||||||||||||||||
Sbjct: 32 acagcctatcctggattacttgaac 8
>RF00244;mir-26;AAWZ01023535.1/24478-24552 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 51 cacagcctatcctggattacttgaa 75
|||||||||||||||||||||||||
Sbjct: 33 cacagcctatcctggattacttgaa 9
>RF00244;mir-26;AAWZ01018052.1/16808-16735 28377:Anolis
carolinensis (green anole)
Length = 74
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 51 cacagcctatcctggattacttgaa 75
|||||||||||||||||||||||||
Sbjct: 33 cacagcctatcctggattacttgaa 9
>RF00244;mir-26;AADN02000236.1/60671-60744 9031:Gallus gallus
(chicken)
Length = 74
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 52 acagcctatcctggattacttgaac 76
|||||||||||||||||||||||||
Sbjct: 32 acagcctatcctggattacttgaac 8
>RF00244;mir-26;BAAE01056802.1/2019-1945 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 53 cagcctatcctggattacttgaacgaggc 81
|||||||||||||||||||||||| ||||
Sbjct: 31 cagcctatcctggattacttgaaccaggc 3
>RF00244;mir-26;BAAF04021096.1/2358-2285 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 52 acagcctatcctggattacttgaac 76
|||||||||||||||||||||||||
Sbjct: 32 acagcctatcctggattacttgaac 8
>RF00244;mir-26;AAFR03066353.1/7590-7517 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 53 cagcctatcctggattacttgaac 76
||||||||||||||||||||||||
Sbjct: 31 cagcctatcctggattacttgaac 8
>RF00244;mir-26;AAFR03041753.1/18045-17975 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 71
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 52 acagcctatcctggattacttgaa 75
||||||||||||||||||||||||
Sbjct: 32 acagcctatcctggattacttgaa 9
>RF00244;mir-26;AAGU02304058.1/2186-2113 9785:Loxodonta africana
(African savanna elephant)
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 52 acagcctatcctggattacttgaa 75
||||||||||||||||||||||||
Sbjct: 32 acagcctatcctggattacttgaa 9
>RF00244;mir-26;CR388015.14/128267-128194 7955:Danio rerio
(zebrafish)
Length = 74
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 54 agcctatcctggattacttgaac 76
|||||||||||||||||||||||
Sbjct: 30 agcctatcctggattacttgaac 8
>RF00244;mir-26;CAAE01014737.1/605161-605232 99883:Tetraodon
nigroviridis
Length = 72
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 54 agcctatcctggattacttgaac 76
|||||||||||||||||||||||
Sbjct: 30 agcctatcctggattacttgaac 8
>RF00244;mir-26;AC098806.3/13416-13344 31033:Takifugu rubripes
Length = 73
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 54 agcctatcctggattacttgaac 76
|||||||||||||||||||||||
Sbjct: 30 agcctatcctggattacttgaac 8
>RF00244;mir-26;AANH01005795.1/17049-17122 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 74
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 54 agcctatcctggattacttgaac 76
|||||||||||||||||||||||
Sbjct: 30 agcctatcctggattacttgaac 8
>RF00244;mir-26;BAAF04005282.1/5752-5678 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 56 cctatcctggattacttgaacgaggcc 82
||||||||||||||||||||| |||||
Sbjct: 28 cctatcctggattacttgaaccaggcc 2
>RF00244;mir-26;BAAE01145746.1/1134-1208 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 54 agcctatcctggattacttgaac 76
|||||||||||||||||||||||
Sbjct: 30 agcctatcctggattacttgaac 8
>RF00244;mir-26;BX957326.8/213855-213781 7955:Danio rerio
(zebrafish)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 56 cctatcctggattacttgaacgaggc 81
||||||||||||||||||||| ||||
Sbjct: 28 cctatcctggattacttgaaccaggc 3
>RF00244;mir-26;AANH01007655.1/107291-107217 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 54 agcctatcctggattacttgaa 75
||||||||||||||||||||||
Sbjct: 30 agcctatcctggattacttgaa 9
