miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00644;mir-27;ABRQ01065900.1/2710-2791 9813:Procavia capensis
(cape rock hyrax)
Length = 82
Score = 117 bits (59), Expect = 2e-26
Identities = 75/79 (94%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 1 tggcctggggagcagggcttagctgcttgtgagcagg-tccacatcaaatcgtgttcaca 59
||||||| ||||||||||||||||||||||||||||| |||||| ||| |||||||||||
Sbjct: 1 tggcctgaggagcagggcttagctgcttgtgagcagggtccacaccaagtcgtgttcaca 60
Query: 60 gtggctaagttccgccccc 78
|||||||||||||||||||
Sbjct: 61 gtggctaagttccgccccc 79
>RF00644;mir-27;AANN01357153.1/1239-1159 9365:Erinaceus europaeus
(western European hedgehog)
Length = 81
Score = 73.8 bits (37), Expect = 3e-13
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 2 ggcctggggagcagggcttagctgcttgtgagcaggtccacatcaaatcgtgttcacagt 61
|||||||||||||||||||||||||| |||| |||| || | | || ||||||||||
Sbjct: 2 ggcctggggagcagggcttagctgctggtgaacagggtgtcaccgagtcttgttcacagt 61
Query: 62 ggctaagttccgccccc 78
|||||||||||||||||
Sbjct: 62 ggctaagttccgccccc 78
>RF00644;mir-27;AAPY01721327.1/686-605 37347:Tupaia belangeri
(northern tree shrew)
Length = 82
Score = 69.9 bits (35), Expect = 4e-12
Identities = 63/71 (88%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 2 ggcctggggagcagggcttagctgcttgtgagcag-gtccacatcaaatcgtgttcacag 60
|||||| |||||||||||||||||||||||||||| ||||||| ||| ||| ||||||
Sbjct: 2 ggcctgaggagcagggcttagctgcttgtgagcagcgtccacaccaagctgtgctcacag 61
Query: 61 tggctaagttc 71
|||||| ||||
Sbjct: 62 tggctacgttc 72
>RF00644;mir-27;AAPN01322484.1/470-549 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 50 cgtgttcacagtggctaagttccgcccc 77
||||||||||||||||||||||||||||
Sbjct: 49 cgtgttcacagtggctaagttccgcccc 76
>RF00644;mir-27;AAFR03052006.1/45216-45298 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 56.0 bits (28), Expect = 7e-08
Identities = 60/68 (88%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 9 ggagcagggcttagctgc-ttgtgagcag-gtccacatcaaatcgtgttcacagtggcta 66
|||||||| ||||||||| |||||| ||| ||| ||||| || ||||||||||||||||
Sbjct: 9 ggagcaggacttagctgccttgtgaacagagtcagcatcatattgtgttcacagtggcta 68
Query: 67 agttccgc 74
||||||||
Sbjct: 69 agttccgc 76
>RF00644;mir-27;ABRO01400204.1/542-621 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 52 tgttcacagtggctaagttccgccccc 78
|||||||||||||||||||||||||||
Sbjct: 51 tgttcacagtggctaagttccgccccc 77
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 ggagcagggcttagctgcttgtgagcagg 37
||||||||||||||| ||||||||||||
Sbjct: 9 ggagcagggcttagccacttgtgagcagg 37
>RF00644;mir-27;BAAE01159437.1/1557-1475 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 49 tcgtgttcacagtggctaagttccgc 74
||||||||||||||||||||||||||
Sbjct: 51 tcgtgttcacagtggctaagttccgc 76
>RF00644;mir-27;CAAB01002712.1/1229-1146 31033:Takifugu rubripes
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 gtgttcacagtggctaagttccgc 74
||||||||||||||||||||||||
Sbjct: 54 gtgttcacagtggctaagttccgc 77
>RF00644;mir-27;ABPM01053951.1/750-668 106582:Maylandia zebra
(zebra mbuna)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 gtgttcacagtggctaagttccgc 74
||||||||||||||||||||||||
Sbjct: 53 gtgttcacagtggctaagttccgc 76
>RF00644;mir-27;AANH01005378.1/81241-81159 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 gtgttcacagtggctaagttccgc 74
||||||||||||||||||||||||
Sbjct: 53 gtgttcacagtggctaagttccgc 76
>RF00644;mir-27;AAWZ01000886.1/15608-15527 28377:Anolis
carolinensis (green anole)
Length = 82
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 tgttcacagtggctaagttccgc 74
|||||||||||||||||||||||
Sbjct: 53 tgttcacagtggctaagttccgc 75
>RF00644;mir-27;BX664751.9/57144-57062 7955:Danio rerio
(zebrafish)
Length = 83
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 tgttcacagtggctaagttccgc 74
|||||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttccgc 76
>RF00644;mir-27;AAVX01257813.1/610-525 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 tgttcacagtggctaagttccgc 74
|||||||||||||||||||||||
Sbjct: 57 tgttcacagtggctaagttccgc 79
