miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00074;mir-29;AADN02044957.1/857-794 9031:Gallus gallus
(chicken)
Length = 64
Score = 81.8 bits (41), Expect = 1e-15
Identities = 59/64 (92%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 15 ctgaccgatttctcctggtgttcagagtct--gtttttgtctagcaccatttgaaatcga 72
|||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 1 ctgaccgatttctcttggtgttcagagtctcagtttctgtctagcaccatttgaaatcgg 60
Query: 73 ttat 76
||||
Sbjct: 61 ttat 64
>RF00074;mir-29;ABVD01453472.1/1046-987 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 60
Score = 65.9 bits (33), Expect = 8e-11
Identities = 47/49 (95%), Gaps = 2/49 (4%)
Strand = Plus / Plus
Query: 15 ctgaccgatttctcctggtgttcagagtctgtttttgtctagcaccatt 63
|||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 1 ctgaccgatttctcctggtg-tcagagtctg-ttttgtctagcaccatt 47
>RF00074;mir-29;BAAF04011253.1/3876-3938 8090:Oryzias latipes
(Japanese medaka)
Length = 63
Score = 58.0 bits (29), Expect = 2e-08
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 16 tgaccgatttctcctggtgttcagagtctgtt-tttgtctagcaccatttgaaatcg 71
|||||||||||| |||||||||||||| ||| | | ||||||||||||||||||||
Sbjct: 2 tgaccgatttcttttggtgttcagagtccgttctgtttctagcaccatttgaaatcg 58
>RF00074;mir-29;AAWZ01025678.1/1955-1892 28377:Anolis carolinensis
(green anole)
Length = 64
Score = 46.1 bits (23), Expect = 7e-05
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 16 tgaccgatttctcctggtgttcagagtct-gtttt-tgtctagcaccatttgaaatcgat 73
|||| ||||||| ||||||||| |||||| ||| | | |||||||||||||||||||| |
Sbjct: 2 tgactgatttcttctggtgttcggagtctagttctctttctagcaccatttgaaatcggt 61
Query: 74 tat 76
|||
Sbjct: 62 tat 64
>RF00074;mir-29;AADN02039691.1/13652-13582 9031:Gallus gallus
(chicken)
Length = 71
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ttgtctagcaccatttgaaatc 70
||||||||||||||||||||||
Sbjct: 42 ttgtctagcaccatttgaaatc 63
>RF00074;mir-29;AANH01007454.1/2347-2415 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 tgtctagcaccatttgaaatcg 71
||||||||||||||||||||||
Sbjct: 41 tgtctagcaccatttgaaatcg 62
>RF00074;mir-29;BAAE01022609.1/1375-1305 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ttgtctagcaccatttgaaatc 70
||||||||||||||||||||||
Sbjct: 42 ttgtctagcaccatttgaaatc 63
>RF00074;mir-29;BAAF04011924.1/411-473 8090:Oryzias latipes
(Japanese medaka)
Length = 63
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 tgtctagcaccatttgaaatcg 71
||||||||||||||||||||||
Sbjct: 37 tgtctagcaccatttgaaatcg 58
