miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;EU549097.1/220-333 3702:Arabidopsis thaliana
(thale cress)
Length = 114
Score = 226 bits (114), Expect = 6e-59
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 12 gagtccctttgatattggcctggttcactcagatcttacctgaccacacacgtagatata 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagtccctttgatattggcctggttcactcagatcttacctgaccacacacgtagatata 60
Query: 72 cattattctctctagattatctgattgagccgcgccaatatctcagtactctct 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cattattctctctagattatctgattgagccgcgccaatatctcagtactctct 114
>RF00643;MIR171_1;AC189627.2/36180-36072 51351:Brassica rapa subsp.
pekinensis
Length = 109
Score = 85.7 bits (43), Expect = 1e-16
Identities = 97/109 (88%), Gaps = 7/109 (6%)
Strand = Plus / Plus
Query: 18 ctttgatattggcctggttcactcagatcttacctgaccacacacgtag-atatacatta 76
||||||||||||||||||||||||||||||| || || ||||||||| |||||||||
Sbjct: 7 ctttgatattggcctggttcactcagatctt-ccagattacacacgtactatatacatt- 64
Query: 77 ttctctctagattatctgattgagccgcgccaatatctcagtactctct 125
||||| || ||||||||||||||||||||||||||||||| ||||||
Sbjct: 65 --ctctc-ag-ttatctgattgagccgcgccaatatctcagtgctctct 109
>RF00643;MIR171_1;EU549081.1/305-220 3702:Arabidopsis thaliana
(thale cress)
Length = 86
Score = 60.0 bits (30), Expect = 8e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 12 gagtccctttgatattggcctggttcactcagat 45
|||||||| |||||||||||||||||||||||||
Sbjct: 1 gagtccctctgatattggcctggttcactcagat 34
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 90 atctgattgagccgcgccaatatctcagtactctct 125
|||||||||||||| | |||||||||||| ||||||
Sbjct: 51 atctgattgagccgtgtcaatatctcagtcctctct 86
>RF00643;MIR171_1;EU940714.1/212-315 4577:Zea mays
Length = 104
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 91 tctgattgagccgcgccaatatctcagtactct 123
||||||||||||| |||||||||||||||||||
Sbjct: 70 tctgattgagccgtgccaatatctcagtactct 102
>RF00643;MIR171_1;EU946837.1/362-465 4577:Zea mays
Length = 104
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 91 tctgattgagccgcgccaatatctcagtactct 123
||||||||||||| |||||||||||||||||||
Sbjct: 70 tctgattgagccgtgccaatatctcagtactct 102
>RF00643;MIR171_1;ABXC01000737.1/81777-81641 4558:Sorghum bicolor
(sorghum)
Length = 137
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 91 tctgattgagccgcgccaatatctcagtactct 123
||||||||||||| |||||||||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatctcagtactct 135
>RF00643;MIR171_1;AC215372.2/27425-27538 4081:Solanum lycopersicum
Length = 114
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 18 ctttgatattggcctggttcactcaga 44
|||||||||||||||||||||||||||
Sbjct: 7 ctttgatattggcctggttcactcaga 33
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 93 tgattgagccgcgccaatatctcagt 118
||||||||||| ||||||||||||||
Sbjct: 82 tgattgagccgtgccaatatctcagt 107
>RF00643;MIR171_1;AP003573.3/25796-25895 39947:Oryza sativa Japonica
Group
Length = 100
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 89 tatctgattgagccgcgccaatatctc 115
|||||||||||||||||||||||||||
Sbjct: 64 tatctgattgagccgcgccaatatctc 90
>RF00643;MIR171_1;ABIM01002570.1/7961-8103 3649:Carica papaya
(papaya)
Length = 143
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 12 gagtccctttgatattggcctggttcactcaga 44
||||| || ||||||||||||||||||||||||
Sbjct: 1 gagtcactatgatattggcctggttcactcaga 33
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 93 tgattgagccgcgccaatatctcagt 118
||||||||||| ||||||||||||||
Sbjct: 111 tgattgagccgtgccaatatctcagt 136
>RF00643;MIR171_1;AY728471.1/4-115 3694:Populus trichocarpa
Length = 112
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 22 gatattggcctggttcactcagatc 46
|||||||||||||||||||||||||
Sbjct: 1 gatattggcctggttcactcagatc 25
>RF00643;MIR171_1;ABXC01000488.1/1154-1044 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 91 tctgattgagccgcgccaatatctcagtactct 123
||||||||||||| |||||||||| ||||||||
Sbjct: 77 tctgattgagccgtgccaatatcttagtactct 109
>RF00643;MIR171_1;AASG02019837.1/638-762 3988:Ricinus communis
(castor bean)
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 tgatattggcctggttcactcaga 44
||||||||||||||||||||||||
Sbjct: 10 tgatattggcctggttcactcaga 33
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 93 tgattgagccgcgccaatatctcagt 118
||||||||||| ||||||||||||||
Sbjct: 93 tgattgagccgtgccaatatctcagt 118
>RF00643;MIR171_1;AP010316.1/5761-5862 34305:Lotus japonicus
Length = 102
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 atctgattgagccgcgccaatatc 113
||||||||||||||||||||||||
Sbjct: 67 atctgattgagccgcgccaatatc 90
>RF00643;MIR171_1;AC150705.17/109871-109755 3880:Medicago
truncatula (barrel medic)
Length = 117
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 gatattggcctggttcactcaga 44
|||||||||||||||||||||||
Sbjct: 11 gatattggcctggttcactcaga 33
>RF00643;MIR171_1;BABK01108397.1/266-409 34305:Lotus japonicus
Length = 144
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 gatattggcctggttcactcaga 44
|||||||||||||||||||||||
Sbjct: 11 gatattggcctggttcactcaga 33
>RF00643;MIR171_1;CAAP02000222.1/31256-31356 29760:Vitis vinifera
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tctgattgagccgcgccaatatc 113
|||||||||||||||||||||||
Sbjct: 67 tctgattgagccgcgccaatatc 89
>RF00643;MIR171_1;AAAA02030424.1/14947-15083 39946:Oryza sativa
Indica Group
Length = 137
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 91 tctgattgagccgcgccaatatctcag 117
||||||||||||| |||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatctcag 129
>RF00643;MIR171_1;AM486682.2/2891-2758 29760:Vitis vinifera
Length = 134
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 93 tgattgagccgcgccaatatctcagt 118
||||||||||| ||||||||||||||
Sbjct: 102 tgattgagccgtgccaatatctcagt 127
>RF00643;MIR171_1;ABXC01002454.1/83659-83541 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 ctgattgagccgcgccaatatc 113
||||||||||||||||||||||
Sbjct: 86 ctgattgagccgcgccaatatc 107
