miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 367 bits (185), Expect = e-101
Identities = 188/189 (99%)
Strand = Plus / Plus
Query: 1 ggtggaggaagagagctttcttcggtccactcatggagtaatatgtgagatttaattgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtggaggaagagagctttcttcggtccactcatggagtaatatgtgagatttaattgac 60
Query: 61 tctcgactcattcatccaaataccaaatgaaagaatttgttctcatatggtaaatgaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctcgactcattcatccaaataccaaatgaaagaatttgttctcatatggtaaatgaatg 120
Query: 121 aatgatgcgagggacaaattgagtcttcacttctctatgcttggactgaagggagctccc 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatgatgcgagagacaaattgagtcttcacttctctatgcttggactgaagggagctccc 180
Query: 181 tatttttat 189
|||||||||
Sbjct: 181 tatttttat 189
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 67.9 bits (34), Expect = 5e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 112 aaatgaatgaatgatgcgagggacaaattgagtcttcacttctctatgcttggactgaag 171
|||||| ||||||||||| | |||||||||| |||| | || |||| ||||||||||||
Sbjct: 114 aaatgagtgaatgatgcgggagacaaattgaatcttaagtttcctatacttggactgaag 173
Query: 172 ggagctccct 181
||||||||||
Sbjct: 174 ggagctccct 183
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 63.9 bits (32), Expect = 7e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 110 gtaaatgaatgaatgatgcgagggacaaattgagtcttcacttctctatgcttggactga 169
|||||||| ||||||||||| | ||||||||| |||| | || || ||||||||||||
Sbjct: 101 gtaaatgattgaatgatgcgggagacaaattggatcttaagctccctgtgcttggactga 160
Query: 170 agggagctccct 181
||||||||||||
Sbjct: 161 agggagctccct 172
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 8 gaagagagctttcttcggtccactcatgg 36
|||||||||||||||| ||||||||||||
Sbjct: 8 gaagagagctttcttcagtccactcatgg 36
>RF00638;MIR159;AY775965.1/635-826 13288:Thlaspi arvense
Length = 192
Score = 61.9 bits (31), Expect = 3e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 111 taaatgaatgaatgatgcgagggacaaattgagtcttcacttctctatgcttggactgaa 170
||||||||||||||| ||| ||||||||| ||| | ||||||||| ||||||||||
Sbjct: 111 taaatgaatgaatgaagcggtagacaaattgggtcattgattctctatgattggactgaa 170
Query: 171 gggagctccct 181
|||||||||||
Sbjct: 171 gggagctccct 181
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 58.0 bits (29), Expect = 5e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 145 cttcacttctctatgcttggactgaagggagctccct 181
|||| ||||||| ||||||||||||||||||||||||
Sbjct: 153 cttctcttctctgtgcttggactgaagggagctccct 189
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 58.0 bits (29), Expect = 5e-08
Identities = 64/73 (87%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 110 gtaaatgaatgaatgatgcgagggacaaattgagtcttca-cttctctatgcttggactg 168
|||||||| ||||||||||| | |||||||||| |||| | |||| || | |||||||||
Sbjct: 141 gtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttc-ctgtacttggactg 199
Query: 169 aagggagctccct 181
|||||||||||||
Sbjct: 200 aagggagctccct 212
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 9 aagagagctttcttcggtccactcatgg 36
||||||||||||||| ||||||||||||
Sbjct: 9 aagagagctttcttcagtccactcatgg 36
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 150 cttctctatgcttggactgaagggagctccct 181
||||||| ||||||||||||||||||||||||
Sbjct: 142 cttctctgtgcttggactgaagggagctccct 173
>RF00638;MIR159;AY775959.1/657-850 81985:Capsella rubella
Length = 194
Score = 54.0 bits (27), Expect = 7e-07
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 111 taaatgaatgaatgatgcgagggacaaattgagtcttcacttctctatgcttggactgaa 170
||||||||||||||||||| ||||||||| || | |||||| || ||||||||||
Sbjct: 113 taaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 172
Query: 171 gggagctccct 181
|||||||||||
Sbjct: 173 gggagctccct 183
>RF00638;MIR159;AY775963.1/615-806 50459:Barbarea vulgaris (winter
cress)
Length = 192
Score = 54.0 bits (27), Expect = 7e-07
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 111 taaatgaatgaatgatgcgagggacaaattgagtcttcacttctctatgcttggactgaa 170
||||||||||||||||||| ||||||||| || | |||||| || ||||||||||
Sbjct: 111 taaatgaatgaatgatgcggtagacaaattggatcattgattctctctgattggactgaa 170
Query: 171 gggagctccct 181
|||||||||||
Sbjct: 171 gggagctccct 181
>RF00638;MIR159;AY922331.1/1646-1837 3702:Arabidopsis thaliana
(thale cress)
Length = 192
Score = 54.0 bits (27), Expect = 7e-07
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 111 taaatgaatgaatgatgcgagggacaaattgagtcttcacttctctatgcttggactgaa 170
||||||||||||||||||| ||||||||| || | |||||| || ||||||||||
Sbjct: 111 taaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 170
Query: 171 gggagctccct 181
|||||||||||
Sbjct: 171 gggagctccct 181
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 161 ttggactgaagggagctccctatttt 186
||||||||||||||||||||||||||
Sbjct: 147 ttggactgaagggagctccctatttt 172
>RF00638;MIR159;ABIM01005798.1/7517-7326 3649:Carica papaya (papaya)
Length = 192
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 151 ttctctatgcttggactgaagggagctcc 179
|||||| ||||||||||||||||||||||
Sbjct: 151 ttctctgtgcttggactgaagggagctcc 179
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 50.1 bits (25), Expect = 1e-05
Identities = 63/73 (86%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 110 gtaaatgaatgaatgatgcgagggacaaattgagtcttca-cttctctatgcttggactg 168
|||||||| ||||||||||| | |||||||||| || | | |||| || | |||||||||
Sbjct: 108 gtaaatgagtgaatgatgcgggagacaaattgaatcctaagcttc-ctgtacttggactg 166
Query: 169 aagggagctccct 181
|||||||||||||
Sbjct: 167 aagggagctccct 179
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 9 aagagagctttcttcggtccactcatgg 36
||||||||||||||| ||||||||||||
Sbjct: 8 aagagagctttcttcagtccactcatgg 35
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus trichocarpa
Length = 188
Score = 50.1 bits (25), Expect = 1e-05
Identities = 63/73 (86%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 110 gtaaatgaatgaatgatgcgagggacaaattgagtcttca-cttctctatgcttggactg 168
|||||||||||| ||||||| | |||||||| | |||| | |||| |||| ||||||||
Sbjct: 106 gtaaatgaatgagtgatgcgggagacaaattaaatcttaaacttc-ctatcattggactg 164
Query: 169 aagggagctccct 181
|||||||||||||
Sbjct: 165 aagggagctccct 177
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 158 tgcttggactgaagggagctccct 181
||||||||||||||||||||||||
Sbjct: 164 tgcttggactgaagggagctccct 187
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 158 tgcttggactgaagggagctccct 181
||||||||||||||||||||||||
Sbjct: 157 tgcttggactgaagggagctccct 180
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 8 gaagagagctttcttcggtccactcatgga 37
||||||||||| |||| |||||||||||||
Sbjct: 8 gaagagagcttccttcagtccactcatgga 37
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 158 tgcttggactgaagggagctccct 181
||||||||||||||||||||||||
Sbjct: 164 tgcttggactgaagggagctccct 187
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 158 tgcttggactgaagggagctccct 181
||||||||||||||||||||||||
Sbjct: 159 tgcttggactgaagggagctccct 182
>RF00638;MIR159;AY775975.1/842-1033 3713:Brassica oleracea var.
acephala (kale)
Length = 192
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 151 ttctctatgcttggactgaagggagctccct 181
||||||||| |||||||||||| ||||||||
Sbjct: 151 ttctctatgattggactgaaggtagctccct 181
>RF00638;MIR159;ABIM01013664.1/2939-3169 3649:Carica papaya (papaya)
Length = 231
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 cttggactgaagggagctccct 181
||||||||||||||||||||||
Sbjct: 199 cttggactgaagggagctccct 220
>RF00638;MIR159;AARH01009765.1/191097-190892 3694:Populus
trichocarpa
Length = 206
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 158 tgcttggactgaagggagctcc 179
||||||||||||||||||||||
Sbjct: 172 tgcttggactgaagggagctcc 193
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus trichocarpa
Length = 204
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 158 tgcttggactgaagggagctcc 179
||||||||||||||||||||||
Sbjct: 170 tgcttggactgaagggagctcc 191
>RF00638;MIR159;AASG02014601.1/2536-2726 3988:Ricinus communis
(castor bean)
Length = 191
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 cttggactgaagggagctccct 181
||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccct 180
>RF00638;MIR159;AASG02000468.1/24439-24641 3988:Ricinus communis
(castor bean)
Length = 203
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 158 tgcttggactgaagggagctcc 179
||||||||||||||||||||||
Sbjct: 169 tgcttggactgaagggagctcc 190
>RF00638;MIR159;CAAP02000776.1/6894-7088 29760:Vitis vinifera
Length = 195
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 cttggactgaagggagctccct 181
||||||||||||||||||||||
Sbjct: 163 cttggactgaagggagctccct 184
