miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAGU02626700.1/453-531 9785:Loxodonta africana
(African savanna elephant)
Length = 79
Score = 113 bits (57), Expect = 3e-25
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 1 tgaagggagatcgaccgtgttatattcgctttattgacttcgaataatacatggttgatc 60
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 7 tgaagggagatcgaccgtgttatattcgctttcttcacttcgaataatacatggttgatc 66
Query: 61 ttttctcag 69
||| |||||
Sbjct: 67 tttcctcag 75
>RF00641;mir-154;ABRO01197049.1/10447-10525 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 79
Score = 105 bits (53), Expect = 7e-23
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 1 tgaagggagatcgaccgtgttatattcgctttattgacttcgaataatacatggttgatc 60
||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 7 tgaagggagatcgactgtgttatattcgcagtactgacttcgaataatacatggttgatc 66
Query: 61 ttttctcag 69
|||||||||
Sbjct: 67 ttttctcag 75
>RF00641;mir-154;ABRQ01054379.1/186-263 9813:Procavia capensis
(cape rock hyrax)
Length = 78
Score = 105 bits (53), Expect = 7e-23
Identities = 66/69 (95%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 tgaagggagatcgaccgtgttatattcgctttattgacttcgaataatacatggttgatc 60
||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 7 tgaagagagatcgaccgtgttatattcgctttcttgac-tcgaataatacatggttgatc 65
Query: 61 ttttctcag 69
|||||||||
Sbjct: 66 ttttctcag 74
>RF00641;mir-154;AAGW01274484.1/168-246 9986:Oryctolagus cuniculus
(rabbit)
Length = 79
Score = 69.9 bits (35), Expect = 4e-12
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 1 tgaagggagatcgaccgtgttatattcgctttattgacttcgaataatacatggttgatc 60
||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||
Sbjct: 7 tgaagggagatcgaccgtgttccattcgctccgctgacttcgaataatagatggttgatc 66
Query: 61 ttt 63
|||
Sbjct: 67 ttt 69
