miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00840;mir-374;AAGW01240856.1/838-768 9986:Oryctolagus cuniculus
(rabbit)
Length = 71
Score = 125 bits (63), Expect = 8e-29
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 2 acatcggccattataatacaacctgataagtgttacagcacttatcaggttgtattgtaa 61
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 1 acatcggccattataatacaacctgataagtgttacagcacttaccagattgtattgtaa 60
Query: 62 ttgtctgtgta 72
|||||||||||
Sbjct: 61 ttgtctgtgta 71
>RF00840;mir-374;ABRP01307201.1/2979-2909 132908:Pteropus vampyrus
(large flying fox)
Length = 71
Score = 69.9 bits (35), Expect = 4e-12
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 2 acatcggccattataatacaacctgataagtgttacagcacttatcaggttgtattgtaa 61
|||| |||| |||| ||||| ||||||||||||||||||||||| ||||||||| ||||
Sbjct: 1 acataggccgttatgatacagcctgataagtgttacagcacttaccaggttgtaccgtaa 60
Query: 62 ttgtctgtgta 72
|||| |||||
Sbjct: 61 ctgtccgtgta 71
>RF00840;mir-374;AJ421479.1/16189-16259 10090:Mus musculus (house
mouse)
Length = 71
Score = 60.0 bits (30), Expect = 4e-09
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 13 tataatacaacctgataagtgttacagcacttatcaggttgtattgtaattgtc 66
|||||||||||||| |||||||| |||||||| ||||||||||| | ||||||
Sbjct: 12 tataatacaacctgctaagtgttctagcacttagcaggttgtattatcattgtc 65
Score = 48.1 bits (24), Expect = 1e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 14 ataatacaacctgataagtgttacagcacttatcaggttgtatt 57
||||||||||||| |||||| || | |||||| |||||||||||
Sbjct: 58 ataatacaacctgctaagtgctagaacacttagcaggttgtatt 15
>RF00840;mir-374;AAGU02466059.1/2740-2670 9785:Loxodonta africana
(African savanna elephant)
Length = 71
Score = 54.0 bits (27), Expect = 2e-07
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 13 tataatacaacctgataagtgttacagcacttatcaggttgtattgtaattgtctgtgt 71
|||||||||||||| ||||||| ||||||||||||| |||||| | |||||| ||||
Sbjct: 12 tataatacaacctgctaagtgtcctagcacttatcaggctgtattatcattgtccgtgt 70
>RF00840;mir-374;AAPE01385052.1/350-280 59463:Myotis lucifugus
(little brown bat)
Length = 71
Score = 46.1 bits (23), Expect = 6e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 13 tataatacaacctgataagtgttacagcacttatcaggttgta 55
|||||||||||||| |||||| ||||||||| |||||||||
Sbjct: 12 tataatacaacctggtaagtggcccagcacttaccaggttgta 54
>RF00840;mir-374;AALT01656114.1/3449-3379 42254:Sorex araneus
(European shrew)
Length = 71
Score = 42.1 bits (21), Expect = 9e-04
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 13 tataatacaacctgataagtgttacagcacttatcaggttgtatt 57
|||||||||||||| ||||||| | |||||| |||||||||||
Sbjct: 12 tataatacaacctgctaagtgtactaccacttaccaggttgtatt 56
