miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00700;mir-375;AAGU02520619.1/1351-1284 9785:Loxodonta africana
(African savanna elephant)
Length = 68
Score = 117 bits (59), Expect = 2e-26
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 6 cgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtgaggc 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 cgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtgaggc 64
>RF00700;mir-375;ABQO010847357.1/1620-1552 9315:Macropus eugenii
(tammar wallaby)
Length = 69
Score = 58.0 bits (29), Expect = 1e-08
Identities = 49/53 (92%), Gaps = 2/53 (3%)
Strand = Plus / Plus
Query: 13 cccctcgcac-aaaccggacctgagcgttttgttcgttcggctcgcgtgaggc 64
|||||||||| |||||||| |||| ||| ||||||||||||||||||||||||
Sbjct: 14 cccctcgcacaaaaccgga-ctgaacgtattgttcgttcggctcgcgtgaggc 65
>RF00700;mir-375;AADN02016765.1/7226-7294 9031:Gallus gallus
(chicken)
Length = 69
Score = 56.0 bits (28), Expect = 5e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 29 gacctgagcgttttgttcgttcggctcgcgtgaggc 64
||||||| ||||||||||||||||||||||| ||||
Sbjct: 30 gacctgaacgttttgttcgttcggctcgcgttaggc 65
>RF00700;mir-375;ABEP02038283.1/5668-5595 7739:Branchiostoma
floridae (Florida lancelet)
Length = 74
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 cgttttgttcgttcggctcgcgt 59
|||||||||||||||||||||||
Sbjct: 43 cgttttgttcgttcggctcgcgt 65
>RF00700;mir-375;CU929360.7/11656-11724 7955:Danio rerio
(zebrafish)
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 38 gttttgttcgttcggctcgcgt 59
||||||||||||||||||||||
Sbjct: 39 gttttgttcgttcggctcgcgt 60
>RF00700;mir-375;CU468956.14/114092-114163 7955:Danio rerio
(zebrafish)
Length = 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 38 gttttgttcgttcggctcgcgt 59
||||||||||||||||||||||
Sbjct: 42 gttttgttcgttcggctcgcgt 63
>RF00700;mir-375;BAAF04058576.1/818-750 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 38 gttttgttcgttcggctcgcgt 59
||||||||||||||||||||||
Sbjct: 39 gttttgttcgttcggctcgcgt 60
