miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054372.1/2194-2273 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 151 bits (76), Expect = 2e-36
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 12 ggtatttaaaaggtagattctccttctatgagtacattatttacgattaatcatagagga 71
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 ggtatttaaaaggtagattctccttctatgagtacattatttatgattaatcatagagga 60
Query: 72 aaatccacgttttcagtatc 91
||||||||||||||||||||
Sbjct: 61 aaatccacgttttcagtatc 80
>RF00641;mir-154;AAIY01443497.1/2027-2105 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 75.8 bits (38), Expect = 9e-14
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 12 ggtatttaaaaggtagattctccttctatgagtacattatttacgattaatcatagagga 71
||||||||||||||||||| ||||| |||| ||| || || | | ||||||||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttttatggttacgtt-ttgatggttaatcatagagga 59
Query: 72 aaatccacgttttcagta 89
||||||||||||||||||
Sbjct: 60 aaatccacgttttcagta 77
>RF00641;mir-154;AAGW01206553.1/1248-1327 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 71.9 bits (36), Expect = 1e-12
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 12 ggtatttaaaaggtagattctccttctatgagtacattatttacgattaatcatagagga 71
|||||||||||||| |||| |||||||||| ||| | ||| | ||||||||||||||
Sbjct: 1 ggtatttaaaaggtggattttccttctatgtttacgtgattgctggttaatcatagagga 60
Query: 72 aaatccacgttttcagtatc 91
||||||| ||||||||||||
Sbjct: 61 aaatccatgttttcagtatc 80
>RF00641;mir-154;AADB02234032.1/262-341 9606:Homo sapiens (human)
Length = 80
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 58 ttaatcatagaggaaaatccacgttttcagtatc 91
||||||||||||||||||||||||||||||||||
Sbjct: 47 ttaatcatagaggaaaatccacgttttcagtatc 80
>RF00641;mir-154;AAGW01206553.1/954-1033 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 63.9 bits (32), Expect = 4e-10
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 12 ggtatttaaaaggtagattctccttctatgagtacattatttacgattaatcatagagga 71
||||||||||||||||||| |||||| |||| ||| | | | ||||||||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttcaatgattacgtgttgcctggttaatcatagagga 60
Query: 72 aaatccacgttttcagtatc 91
|||||||| |||||||||||
Sbjct: 61 aaatccacattttcagtatc 80
>RF00641;mir-154;ABRQ01054372.1/1100-1179 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 63.9 bits (32), Expect = 4e-10
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 12 ggtatttaaaaggtagattctccttctatgagtacattatttacgattaatcatagagga 71
|||||||||||||| ||| |||||||||| || ||||||| | |||| |||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatgtttatgttatttatggttaaacatagagga 60
Query: 72 aaatccacgttttcagtatc 91
|| ||||| |||||||||||
Sbjct: 61 aattccacattttcagtatc 80
>RF00641;mir-154;AANU01197805.1/77711-77790 9544:Macaca mulatta
(rhesus monkey)
Length = 80
Score = 60.0 bits (30), Expect = 6e-09
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 18 taaaaggtagattctccttctatgagtacattatttacgattaatcatagaggaaaatcc 77
|||||||| ||| |||||||||| |||| ||||| | ||||||||||||||||||||
Sbjct: 7 taaaaggtggatgttccttctatgcttacaggatttatggttaatcatagaggaaaatcc 66
Query: 78 acgttttcagtatc 91
|| || ||||||||
Sbjct: 67 acattgtcagtatc 80
>RF00641;mir-154;AAYZ01424898.1/1376-1455 9978:Ochotona princeps
(American pika)
Length = 80
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 58 ttaatcatagaggaaaatccacgttttcagtatc 91
|||||||||||||||| |||||||||||||||||
Sbjct: 47 ttaatcatagaggaaattccacgttttcagtatc 80
>RF00641;mir-154;AANG01662501.1/383-463 9685:Felis catus (domestic
cat)
Length = 81
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 58 ttaatcatagaggaaaatccacgttttc 85
||||||||||||||||||||||||||||
Sbjct: 48 ttaatcatagaggaaaatccacgttttc 75
>RF00641;mir-154;AAEX02019639.1/145777-145856 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 58 ttaatcatagaggaaaatccacgtttt 84
|||||||||||||||||||||||||||
Sbjct: 47 ttaatcatagaggaaaatccacgtttt 73
>RF00641;mir-154;ABRN01448850.1/16136-16215 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 58 ttaatcatagaggaaaatccacgttttcagtatc 91
|||| ||||||||||||||||| |||||||||||
Sbjct: 47 ttaagcatagaggaaaatccacattttcagtatc 80
>RF00641;mir-154;ABDC01257673.1/7254-7333 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 58 ttaatcatagaggaaaatccacgttttcag 87
|||||||||||||||||||||| |||||||
Sbjct: 47 ttaatcatagaggaaaatccacattttcag 76
>RF00641;mir-154;ABRT010163748.1/957-1036 9478:Tarsius syrichta
(Philippine tarsier)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 58 ttaatcatagaggaaaatccacgttttcag 87
|||||||||||||||||||||| |||||||
Sbjct: 47 ttaatcatagaggaaaatccacattttcag 76
>RF00641;mir-154;ABRQ01054372.1/1857-1937 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 58 ttaatcatagaggaaaatccacgttttcagtatc 91
||||||||||||||||||||| |||||||||||
Sbjct: 48 ttaatcatagaggaaaatccatattttcagtatc 81
>RF00641;mir-154;CAAA01088157.1/21210-21131 10090:Mus musculus
(house mouse)
Length = 80
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 59 taatcatagaggaaaatccacgttttcagtatc 91
|||||||||||||| |||||| |||||||||||
Sbjct: 48 taatcatagaggaacatccactttttcagtatc 80
>RF00641;mir-154;AAKN02051949.1/111080-111159 10141:Cavia
porcellus (domestic guinea pig)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 58 ttaatcatagaggaaaatccacgttttcagta 89
||||||||| |||||||||||||||||||||
Sbjct: 47 ttaatcatacgggaaaatccacgttttcagta 78
