miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAGW01206553.1/1248-1327 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 119 bits (60), Expect = 7e-27
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 7 ggtatttaaaaggtggatattccttctatgtttacgtgattcatagataatcatagagga 66
|||||||||||||||||| |||||||||||||||||||||| | | |||||||||||||
Sbjct: 1 ggtatttaaaaggtggattttccttctatgtttacgtgattgctggttaatcatagagga 60
Query: 67 aaatccatgttttcagtatc 86
||||||||||||||||||||
Sbjct: 61 aaatccatgttttcagtatc 80
>RF00641;mir-154;CAAA01088157.1/21210-21131 10090:Mus musculus
(house mouse)
Length = 80
Score = 103 bits (52), Expect = 4e-22
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 7 ggtatttaaaaggtggatattccttctatgtttacgtgattcatagataatcatagagga 66
|||||||||||||||||||||||||||||| ||||||| ||| | |||||||||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatggttacgtgcttcctggataatcatagagga 60
Query: 67 aaatccatgttttcagtatc 86
| ||||| |||||||||||
Sbjct: 61 acatccactttttcagtatc 80
>RF00641;mir-154;ABRQ01054372.1/1100-1179 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 87.7 bits (44), Expect = 2e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 7 ggtatttaaaaggtggatattccttctatgtttacgtgattcatagataatcatagagga 66
|||||||||||||||||||||||||||||||||| || ||| || | ||| |||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatgtttatgttatttatggttaaacatagagga 60
Query: 67 aaatccatgttttcagtatc 86
|| |||| |||||||||||
Sbjct: 61 aattccacattttcagtatc 80
>RF00641;mir-154;AAEX02019639.1/145777-145856 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 83.8 bits (42), Expect = 4e-16
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 18 ggtggatattccttctatgtttacgtgattcatagataatcatagaggaaaatccatgtt 77
||||||| ||||||||||||||||| |||| |||| |||||||||||||||||||| |||
Sbjct: 12 ggtggatgttccttctatgtttacgggatttatagttaatcatagaggaaaatccacgtt 71
Query: 78 tt 79
||
Sbjct: 72 tt 73
>RF00641;mir-154;ABRT010163748.1/957-1036 9478:Tarsius syrichta
(Philippine tarsier)
Length = 80
Score = 81.8 bits (41), Expect = 1e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 14 aaaaggtggatattccttctatgtttacgtgattcatagataatcatagaggaaaatcca 73
|||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||
Sbjct: 8 aaaaggtggatattccttctatgtttacagaatttatagttaatcatagaggaaaatcca 67
Query: 74 tgttttcag 82
|||||||
Sbjct: 68 cattttcag 76
>RF00641;mir-154;ABRQ01054372.1/1857-1937 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 81.8 bits (41), Expect = 1e-15
Identities = 72/81 (88%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 7 ggtatttaaaaggtggatattccttctatgttt-acgtgattcatagataatcatagagg 65
|||||||||||||||||| ||||| |||||||| || || ||| | | ||||||||||||
Sbjct: 1 ggtatttaaaaggtggattttcctcctatgttttacatgcttcgtggttaatcatagagg 60
Query: 66 aaaatccatgttttcagtatc 86
||||||||| |||||||||||
Sbjct: 61 aaaatccatattttcagtatc 81
>RF00641;mir-154;AAFC03087120.1/1987-1908 9913:Bos taurus (cattle)
Length = 80
Score = 75.8 bits (38), Expect = 9e-14
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 9 tatttaaaaggtggatattccttctatgtttacgtgattcatagataatcatagaggaaa 68
|||| |||||||||||||||||||||||||||| |||| | || ||| |||||||||||
Sbjct: 3 tattcaaaaggtggatattccttctatgtttacaggattgacagctaaacatagaggaaa 62
Query: 69 atccatgttttcagtatc 86
||||| |||| ||||||
Sbjct: 63 atccacattttaagtatc 80
>RF00641;mir-154;AADB02234032.1/262-341 9606:Homo sapiens (human)
Length = 80
Score = 73.8 bits (37), Expect = 3e-13
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 26 ttccttctatgtttacgtgattcatagataatcatagaggaaaatccatgttttcagtat 85
||||||||||| ||||||| || || | |||||||||||||||||||| |||||||||||
Sbjct: 20 ttccttctatggttacgtgtttgatggttaatcatagaggaaaatccacgttttcagtat 79
Query: 86 c 86
|
Sbjct: 80 c 80
>RF00641;mir-154;AAGW01206553.1/954-1033 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 71.9 bits (36), Expect = 1e-12
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 7 ggtatttaaaaggtggatattccttctatgtttacgtgattcatagataatcatagagga 66
|||||||||||||| ||| ||||||| ||| ||||||| | | | | |||||||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttcaatgattacgtgttgcctggttaatcatagagga 60
Query: 67 aaatccatgttttcagtatc 86
||||||| |||||||||||
Sbjct: 61 aaatccacattttcagtatc 80
>RF00641;mir-154;AANG01662501.1/383-463 9685:Felis catus (domestic
cat)
Length = 81
Score = 69.9 bits (35), Expect = 5e-12
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 7 ggtatttaaaaggtggatattccttctatgtttacgtga-ttcatagataatcatagagg 65
|||||| | ||||||||| ||||||||||||||||| || || | || ||||||||||||
Sbjct: 1 ggtattcagaaggtggatgttccttctatgtttacgggacttaacagttaatcatagagg 60
Query: 66 aaaatccatgttttc 80
|||||||| ||||||
Sbjct: 61 aaaatccacgttttc 75
>RF00641;mir-154;AANU01197805.1/77711-77790 9544:Macaca mulatta
(rhesus monkey)
Length = 80
Score = 67.9 bits (34), Expect = 2e-11
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 13 taaaaggtggatattccttctatgtttacgtgattcatagataatcatagaggaaaatcc 72
|||||||||||| ||||||||||| |||| |||| || | |||||||||||||||||||
Sbjct: 7 taaaaggtggatgttccttctatgcttacaggatttatggttaatcatagaggaaaatcc 66
Query: 73 atgttttcagtatc 86
| || ||||||||
Sbjct: 67 acattgtcagtatc 80
>RF00641;mir-154;AAIY01443497.1/2027-2105 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 67.9 bits (34), Expect = 2e-11
Identities = 68/78 (87%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 7 ggtatttaaaaggtggatattccttctatgtttacgtgattcatagataatcatagagga 66
|||||||||||||| ||| |||||| |||| |||||| || || | |||||||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttttatggttacgtt-ttgatggttaatcatagagga 59
Query: 67 aaatccatgttttcagta 84
||||||| ||||||||||
Sbjct: 60 aaatccacgttttcagta 77
>RF00641;mir-154;ABDC01257673.1/7254-7333 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 65.9 bits (33), Expect = 8e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 14 aaaaggtggatattccttctatgtttacgtgattcatagataatcatagaggaaaatcca 73
||||||||||| |||||||||||||||| |||| | | ||||||||||||||||||||
Sbjct: 8 aaaaggtggatgttccttctatgtttacaggatttgtggttaatcatagaggaaaatcca 67
Query: 74 tgttttcag 82
|||||||
Sbjct: 68 cattttcag 76
>RF00641;mir-154;AANN01196583.1/1560-1639 9365:Erinaceus europaeus
(western European hedgehog)
Length = 80
Score = 63.9 bits (32), Expect = 3e-10
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 7 ggtatttaaaaggtggatattccttctatgtttacgtgattcatagataatcatagagga 66
||||||||||||||||||||| |||||||||||| ||||||| | ||| | |||||||
Sbjct: 1 ggtatttaaaaggtggatatttcttctatgtttattggattcatggttaaacgtagagga 60
Query: 67 aaatccatgttttcagtatc 86
| |||| |||||||||||
Sbjct: 61 agttccactttttcagtatc 80
>RF00641;mir-154;AAQR01332677.1/6513-6587 30611:Otolemur garnettii
(small-eared galago)
Length = 75
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 7 ggtatttaaaaggtggatattccttctatgtt 38
||||||||||||||||||||||||||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatgtt 32
>RF00641;mir-154;AAYZ01424898.1/1376-1455 9978:Ochotona princeps
(American pika)
Length = 80
Score = 63.9 bits (32), Expect = 3e-10
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 7 ggtatttaaaaggtggatattccttctatgtttacgtgattcatagataatcatagagga 66
|||||||||||||||||| ||||||| ||| |||| || | | | |||||||||||||
Sbjct: 1 ggtatttaaaaggtggattttccttccatgattacatgttgccttcttaatcatagagga 60
Query: 67 aaatccatgttttcagtatc 86
|| |||| ||||||||||||
Sbjct: 61 aattccacgttttcagtatc 80
>RF00641;mir-154;ABRQ01054372.1/2194-2273 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 63.9 bits (32), Expect = 3e-10
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 7 ggtatttaaaaggtggatattccttctatgtttacgtgattcatagataatcatagagga 66
|||||||||||||| ||| |||||||||| ||| | ||| || |||||||||||||
Sbjct: 1 ggtatttaaaaggtagattctccttctatgagtacattatttatgattaatcatagagga 60
Query: 67 aaatccatgttttcagtatc 86
||||||| ||||||||||||
Sbjct: 61 aaatccacgttttcagtatc 80
>RF00641;mir-154;ABRQ01054372.1/730-809 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 14 aaaaggtggatattccttctatgtttacgtgatt 47
||||||||||||||||||||||||||| ||||||
Sbjct: 8 aaaaggtggatattccttctatgtttatgtgatt 41
>RF00641;mir-154;AAQR01332677.1/6164-6240 30611:Otolemur garnettii
(small-eared galago)
Length = 77
Score = 56.0 bits (28), Expect = 8e-08
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 19 gtggatattccttctatgtttacgtgattcatagataatcatagaggaaaat 70
|||||| |||||||||||||||| |||| || | |||||||||||||||||
Sbjct: 10 gtggatgttccttctatgtttacaggatttatggttaatcatagaggaaaat 61
>RF00641;mir-154;ABRP01151523.1/16147-16226 132908:Pteropus
vampyrus (large flying fox)
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 15 aaaggtggatattccttctatgtttacgtgattcatagataatcatagaggaaaatcca 73
|||||||||| |||||||||||||||| | || || | ||| ||||||||||||||||
Sbjct: 9 aaaggtggattttccttctatgtttacagggtttatggttaagcatagaggaaaatcca 67
>RF00641;mir-154;ABRN01448850.1/16136-16215 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 9 tatttaaaaggtggatattccttctatgtttacgtgattcatagataatcatagaggaaa 68
|||| |||| |||||| ||||| |||||||||| |||| | | ||| |||||||||||
Sbjct: 3 tattcaaaaagtggatgttcctcctatgtttacaggatttactgttaagcatagaggaaa 62
Query: 69 atccatgttttcagtatc 86
||||| |||||||||||
Sbjct: 63 atccacattttcagtatc 80
>RF00641;mir-154;CABD01018504.1/18447-18522 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 76
Score = 46.1 bits (23), Expect = 8e-05
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 13 taaaaggtggatattccttctatgtttacgtgattcatagataatcatagaggaa 67
|||||||||||| ||||||||||| |||| |||| || | |||||| |||||||
Sbjct: 6 taaaaggtggatgttccttctatgcttacaggatttatggttaatcacagaggaa 60
>RF00641;mir-154;AAGW01206553.1/392-471 9986:Oryctolagus cuniculus
(rabbit)
Length = 80
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 7 ggtatttaaaaggtggatattccttctatgt 37
|||||| ||||||||||| ||||||||||||
Sbjct: 1 ggtattcaaaaggtggatgttccttctatgt 31
>RF00641;mir-154;AAKN02051949.1/111080-111159 10141:Cavia
porcellus (domestic guinea pig)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 7 ggtatttaaaaggtggatattccttctatg 36
|||||||||||||||||| ||||| |||||
Sbjct: 1 ggtatttaaaaggtggattttcctcctatg 30
