miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054372.1/1100-1179 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 143 bits (72), Expect = 4e-34
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgtttatgttatttgtggttaaacatagagga 63
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatgtttatgttatttatggttaaacatagagga 60
Query: 64 aattccacgttttcagtatc 83
|||||||| |||||||||||
Sbjct: 61 aattccacattttcagtatc 80
>RF00641;mir-154;AAGW01206553.1/1248-1327 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 95.6 bits (48), Expect = 9e-20
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgtttatgttatttgtggttaaacatagagga 63
|||||||||||||||||| ||||||||||||||| || ||| ||||||| |||||||||
Sbjct: 1 ggtatttaaaaggtggattttccttctatgtttacgtgattgctggttaatcatagagga 60
Query: 64 aattccacgttttcagtatc 83
|| |||| ||||||||||||
Sbjct: 61 aaatccatgttttcagtatc 80
>RF00641;mir-154;AANN01196583.1/1560-1639 9365:Erinaceus europaeus
(western European hedgehog)
Length = 80
Score = 87.7 bits (44), Expect = 2e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgtttatgttatttgtggttaaacatagagga 63
||||||||||||||||||||| ||||||||||||| ||| ||||||||| |||||||
Sbjct: 1 ggtatttaaaaggtggatatttcttctatgtttattggattcatggttaaacgtagagga 60
Query: 64 aattccacgttttcagtatc 83
| |||||| |||||||||||
Sbjct: 61 agttccactttttcagtatc 80
>RF00641;mir-154;AAQR01332677.1/6513-6587 30611:Otolemur garnettii
(small-eared galago)
Length = 75
Score = 73.8 bits (37), Expect = 3e-13
Identities = 61/65 (93%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgtttatgttatttgtggttaaacatagagga 63
|||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatg-ttatg-tatttatggtt-aacatagagga 57
Query: 64 aattc 68
|||||
Sbjct: 58 aattc 62
>RF00641;mir-154;ABDC01257673.1/7254-7333 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 73.8 bits (37), Expect = 3e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 11 aaaaggtggatattccttctatgtttatgttatttgtggttaaacatagaggaaattcca 70
||||||||||| ||||||||||||||| |||||||||||| ||||||||||| ||||
Sbjct: 8 aaaaggtggatgttccttctatgtttacaggatttgtggttaatcatagaggaaaatcca 67
Query: 71 cgttttcag 79
| |||||||
Sbjct: 68 cattttcag 76
>RF00641;mir-154;CAAA01088157.1/21210-21131 10090:Mus musculus
(house mouse)
Length = 80
Score = 71.9 bits (36), Expect = 1e-12
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgtttatgttatttgtggttaaacatagagga 63
|||||||||||||||||||||||||||||| ||| || || ||| ||| |||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatggttacgtgcttcctggataatcatagagga 60
Query: 64 aattccacgttttcagtatc 83
| ||||| |||||||||||
Sbjct: 61 acatccactttttcagtatc 80
>RF00641;mir-154;ABRQ01054372.1/2194-2273 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 71.9 bits (36), Expect = 1e-12
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgtttatgttatttgtggttaaacatagagga 63
|||||||||||||| ||| |||||||||| || |||||| || |||| |||||||||
Sbjct: 1 ggtatttaaaaggtagattctccttctatgagtacattatttatgattaatcatagagga 60
Query: 64 aattccacgttttcagtatc 83
|| |||||||||||||||||
Sbjct: 61 aaatccacgttttcagtatc 80
>RF00641;mir-154;AAIY01443497.1/2027-2105 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 67.9 bits (34), Expect = 2e-11
Identities = 68/78 (87%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgtttatgttatttgtggttaaacatagagga 63
|||||||||||||| ||| |||||| |||| ||| ||| || ||||||| |||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttttatggttacgtt-ttgatggttaatcatagagga 59
Query: 64 aattccacgttttcagta 81
|| |||||||||||||||
Sbjct: 60 aaatccacgttttcagta 77
>RF00641;mir-154;ABRT010163748.1/957-1036 9478:Tarsius syrichta
(Philippine tarsier)
Length = 80
Score = 65.9 bits (33), Expect = 8e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 11 aaaaggtggatattccttctatgtttatgttatttgtggttaaacatagaggaaattcca 70
||||||||||||||||||||||||||| |||| | ||||| ||||||||||| ||||
Sbjct: 8 aaaaggtggatattccttctatgtttacagaatttatagttaatcatagaggaaaatcca 67
Query: 71 cgttttcag 79
| |||||||
Sbjct: 68 cattttcag 76
>RF00641;mir-154;ABRQ01054372.1/730-809 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 11 aaaaggtggatattccttctatgtttatgttattt 45
|||||||||||||||||||||||||||||| ||||
Sbjct: 8 aaaaggtggatattccttctatgtttatgtgattt 42
>RF00641;mir-154;AAEX02019639.1/145777-145856 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 60.0 bits (30), Expect = 5e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 15 ggtggatattccttctatgtttatgttatttgtggttaaacatagaggaaattccacgtt 74
||||||| ||||||||||||||| | |||| | ||||| ||||||||||| ||||||||
Sbjct: 12 ggtggatgttccttctatgtttacgggatttatagttaatcatagaggaaaatccacgtt 71
Query: 75 tt 76
||
Sbjct: 72 tt 73
>RF00641;mir-154;AANU01197805.1/77711-77790 9544:Macaca mulatta
(rhesus monkey)
Length = 80
Score = 60.0 bits (30), Expect = 5e-09
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 10 taaaaggtggatattccttctatgtttatgttatttgtggttaaacatagaggaaattcc 69
|||||||||||| ||||||||||| ||| |||| ||||||| ||||||||||| |||
Sbjct: 7 taaaaggtggatgttccttctatgcttacaggatttatggttaatcatagaggaaaatcc 66
Query: 70 acgttttcagtatc 83
|| || ||||||||
Sbjct: 67 acattgtcagtatc 80
>RF00641;mir-154;AAYZ01424898.1/1376-1455 9978:Ochotona princeps
(American pika)
Length = 80
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 50 ttaaacatagaggaaattccacgttttcagtatc 83
|||| |||||||||||||||||||||||||||||
Sbjct: 47 ttaatcatagaggaaattccacgttttcagtatc 80
>RF00641;mir-154;AADB02234032.1/262-341 9606:Homo sapiens (human)
Length = 80
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 47 tggttaaacatagaggaaattccacgttttcagtatc 83
||||||| ||||||||||| |||||||||||||||||
Sbjct: 44 tggttaatcatagaggaaaatccacgttttcagtatc 80
>RF00641;mir-154;ABRQ01054372.1/1857-1937 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 58.0 bits (29), Expect = 2e-08
Identities = 69/81 (85%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgttt-atgttatttgtggttaaacatagagg 62
|||||||||||||||||| ||||| |||||||| | | || |||||||| ||||||||
Sbjct: 1 ggtatttaaaaggtggattttcctcctatgttttacatgcttcgtggttaatcatagagg 60
Query: 63 aaattccacgttttcagtatc 83
||| |||| |||||||||||
Sbjct: 61 aaaatccatattttcagtatc 81
>RF00641;mir-154;AAFC03087120.1/1987-1908 9913:Bos taurus (cattle)
Length = 80
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 6 tatttaaaaggtggatattccttctatgttta 37
|||| |||||||||||||||||||||||||||
Sbjct: 3 tattcaaaaggtggatattccttctatgttta 34
>RF00641;mir-154;AAGW01206553.1/954-1033 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 56.0 bits (28), Expect = 7e-08
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgtttatgttatttgtggttaaacatagagga 63
|||||||||||||| ||| ||||||| ||| ||| || | ||||||| |||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttcaatgattacgtgttgcctggttaatcatagagga 60
Query: 64 aattccacgttttcagtatc 83
|| ||||| |||||||||||
Sbjct: 61 aaatccacattttcagtatc 80
>RF00641;mir-154;AAKN02051949.1/111080-111159 10141:Cavia
porcellus (domestic guinea pig)
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 68/79 (86%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgtttatgttatttg-tggttaaacatagagg 62
|||||||||||||||||| ||||| ||||| ||||| ||| | ||||||| |||| ||
Sbjct: 1 ggtatttaaaaggtggattttcctcctatgattatg-cattggctggttaatcatacggg 59
Query: 63 aaattccacgttttcagta 81
||| |||||||||||||||
Sbjct: 60 aaaatccacgttttcagta 78
>RF00641;mir-154;ABRP01151523.1/16147-16226 132908:Pteropus
vampyrus (large flying fox)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 12 aaaggtggatattccttctatgtttatgttatttgtggttaaacatagaggaaattccac 71
|||||||||| ||||||||||||||| ||| ||||||| ||||||||||| |||||
Sbjct: 9 aaaggtggattttccttctatgtttacagggtttatggttaagcatagaggaaaatccac 68
>RF00641;mir-154;ABRN01448850.1/16136-16215 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 49 gttaaacatagaggaaattccacgttttcagtatc 83
||||| ||||||||||| ||||| |||||||||||
Sbjct: 46 gttaagcatagaggaaaatccacattttcagtatc 80
>RF00641;mir-154;AAGW01206553.1/392-471 9986:Oryctolagus cuniculus
(rabbit)
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgt 34
|||||| ||||||||||| ||||||||||||
Sbjct: 1 ggtattcaaaaggtggatgttccttctatgt 31
>RF00641;mir-154;AANG01662501.1/383-463 9685:Felis catus (domestic
cat)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgttta 37
|||||| | ||||||||| |||||||||||||||
Sbjct: 1 ggtattcagaaggtggatgttccttctatgttta 34
>RF00641;mir-154;AAQR01332677.1/6164-6240 30611:Otolemur garnettii
(small-eared galago)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 16 gtggatattccttctatgtttatgttatttgtggttaaacatagaggaaa 65
|||||| ||||||||||||||| |||| ||||||| |||||||||||
Sbjct: 10 gtggatgttccttctatgtttacaggatttatggttaatcatagaggaaa 59
