miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAGW01206553.1/954-1033 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 103 bits (52), Expect = 3e-22
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 1 ggtatttaaaaggtagattttccttctatgattacgggtttggtgattaatcatagagga 60
|||||||||||||||||||||||||| ||||||||| ||| || ||||||||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttcaatgattacgtgttgcctggttaatcatagagga 60
Query: 61 aaatccacattttcggtatc 80
|||||||||||||| |||||
Sbjct: 61 aaatccacattttcagtatc 80
>RF00641;mir-154;AADB02234032.1/262-341 9606:Homo sapiens (human)
Length = 80
Score = 89.7 bits (45), Expect = 5e-18
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 12 ggtagattttccttctatgattacgggtttggtgattaatcatagaggaaaatccacatt 71
||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||| ||
Sbjct: 12 ggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaaatccacgtt 71
Query: 72 ttcggtatc 80
||| |||||
Sbjct: 72 ttcagtatc 80
>RF00641;mir-154;AAGW01206553.1/1248-1327 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 87.7 bits (44), Expect = 2e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 1 ggtatttaaaaggtagattttccttctatgattacgggtttggtgattaatcatagagga 60
|||||||||||||| ||||||||||||||| ||||| | ||| || ||||||||||||||
Sbjct: 1 ggtatttaaaaggtggattttccttctatgtttacgtgattgctggttaatcatagagga 60
Query: 61 aaatccacattttcggtatc 80
||||||| ||||| |||||
Sbjct: 61 aaatccatgttttcagtatc 80
>RF00641;mir-154;AAIY01443497.1/2027-2105 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 83.8 bits (42), Expect = 3e-16
Identities = 67/74 (90%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 ggtatttaaaaggtagattttccttctatgattacgggtttggtgattaatcatagagga 60
||||||||||||||||||||||||| |||| |||| | |||| || ||||||||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttttatggttac-gttttgatggttaatcatagagga 59
Query: 61 aaatccacattttc 74
|||||||| |||||
Sbjct: 60 aaatccacgttttc 73
>RF00641;mir-154;ABRQ01054372.1/2194-2273 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 79.8 bits (40), Expect = 5e-15
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 1 ggtatttaaaaggtagattttccttctatgattacgggtttggtgattaatcatagagga 60
||||||||||||||||||| ||||||||||| ||| || |||||||||||||||||
Sbjct: 1 ggtatttaaaaggtagattctccttctatgagtacattatttatgattaatcatagagga 60
Query: 61 aaatccacattttcggtatc 80
|||||||| ||||| |||||
Sbjct: 61 aaatccacgttttcagtatc 80
>RF00641;mir-154;ABDC01257673.1/7254-7333 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 77.8 bits (39), Expect = 2e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 8 aaaaggtagattttccttctatgattacgggtttggtgattaatcatagaggaaaatcca 67
||||||| ||| ||||||||||| |||| || || ||| |||||||||||||||||||||
Sbjct: 8 aaaaggtggatgttccttctatgtttacaggatttgtggttaatcatagaggaaaatcca 67
Query: 68 cattttc 74
|||||||
Sbjct: 68 cattttc 74
>RF00641;mir-154;AANU01197805.1/77711-77790 9544:Macaca mulatta
(rhesus monkey)
Length = 80
Score = 67.9 bits (34), Expect = 2e-11
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 7 taaaaggtagattttccttctatgattacgggtttggtgattaatcatagaggaaaatcc 66
|||||||| ||| ||||||||||| |||| || || || ||||||||||||||||||||
Sbjct: 7 taaaaggtggatgttccttctatgcttacaggatttatggttaatcatagaggaaaatcc 66
Query: 67 acattttcggtatc 80
||||| || |||||
Sbjct: 67 acattgtcagtatc 80
>RF00641;mir-154;ABRQ01054372.1/1857-1937 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 65.9 bits (33), Expect = 7e-11
Identities = 70/81 (86%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 ggtatttaaaaggtagattttccttctatgatt-acgggtttggtgattaatcatagagg 59
|||||||||||||| ||||||||| ||||| || || | || ||| |||||||||||||
Sbjct: 1 ggtatttaaaaggtggattttcctcctatgttttacatgcttcgtggttaatcatagagg 60
Query: 60 aaaatccacattttcggtatc 80
|||||||| |||||| |||||
Sbjct: 61 aaaatccatattttcagtatc 81
>RF00641;mir-154;CAAA01088157.1/21210-21131 10090:Mus musculus
(house mouse)
Length = 80
Score = 63.9 bits (32), Expect = 3e-10
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 1 ggtatttaaaaggtagattttccttctatgattacgggtttggtgattaatcatagagga 60
|||||||||||||| ||| ||||||||||| ||||| | || || |||||||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatggttacgtgcttcctggataatcatagagga 60
Query: 61 aaatccacattttcggtatc 80
| |||||| ||||| |||||
Sbjct: 61 acatccactttttcagtatc 80
>RF00641;mir-154;AAYZ01424898.1/1376-1455 9978:Ochotona princeps
(American pika)
Length = 80
Score = 63.9 bits (32), Expect = 3e-10
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 1 ggtatttaaaaggtagattttccttctatgattacgggtttggtgattaatcatagagga 60
|||||||||||||| ||||||||||| |||||||| ||| | ||||||||||||||
Sbjct: 1 ggtatttaaaaggtggattttccttccatgattacatgttgccttcttaatcatagagga 60
Query: 61 aaatccacattttcggtatc 80
|| ||||| ||||| |||||
Sbjct: 61 aattccacgttttcagtatc 80
>RF00641;mir-154;AAPE01089191.1/159-237 59463:Myotis lucifugus
(little brown bat)
Length = 79
Score = 60.0 bits (30), Expect = 4e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 1 ggtatttaaaaggtagattttccttctatgattacgggtttggtgattaatcatagagga 60
|||||| ||||||||| |||||||||||| ||||| || || ||| |||| |||||||||
Sbjct: 1 ggtattgaaaaggtaggttttccttctattattacaggctttgtggttaaccatagagga 60
Query: 61 aa 62
||
Sbjct: 61 aa 62
>RF00641;mir-154;ABRP01151523.1/16147-16226 132908:Pteropus
vampyrus (large flying fox)
Length = 80
Score = 60.0 bits (30), Expect = 4e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 9 aaaggtagattttccttctatgattacgggtttggtgattaatcatagaggaaaatccac 68
|||||| ||||||||||||||| |||| || || || |||| |||||||||||||||||
Sbjct: 9 aaaggtggattttccttctatgtttacagggtttatggttaagcatagaggaaaatccac 68
Query: 69 at 70
||
Sbjct: 69 at 70
>RF00641;mir-154;AAKN02051949.1/111080-111159 10141:Cavia
porcellus (domestic guinea pig)
Length = 80
Score = 60.0 bits (30), Expect = 4e-09
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 1 ggtatttaaaaggtagattttccttctatgattacgggtttggtgattaatcatagagga 60
|||||||||||||| ||||||||| ||||||||| | || | || ||||||||| |||
Sbjct: 1 ggtatttaaaaggtggattttcctcctatgattatgcattggctggttaatcatacggga 60
Query: 61 aaatccacattttc 74
|||||||| |||||
Sbjct: 61 aaatccacgttttc 74
>RF00641;mir-154;AAEX02019639.1/145777-145856 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 56.0 bits (28), Expect = 7e-08
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 20 ttccttctatgattacgggtttggtgattaatcatagaggaaaatccacattttcggtat 79
||||||||||| ||||||| || | |||||||||||||||||||||| |||| |||||
Sbjct: 20 ttccttctatgtttacgggatttatagttaatcatagaggaaaatccacgtttttggtat 79
>RF00641;mir-154;ABRT010163748.1/957-1036 9478:Tarsius syrichta
(Philippine tarsier)
Length = 80
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 47 ttaatcatagaggaaaatccacattttc 74
||||||||||||||||||||||||||||
Sbjct: 47 ttaatcatagaggaaaatccacattttc 74
>RF00641;mir-154;ABRQ01054372.1/1100-1179 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 56.0 bits (28), Expect = 7e-08
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 1 ggtatttaaaaggtagattttccttctatgattacgggtttggtgattaatcatagagga 60
|||||||||||||| ||| ||||||||||| ||| | || || |||| |||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatgtttatgttatttatggttaaacatagagga 60
Query: 61 aaatccacattttcggtatc 80
|| ||||||||||| |||||
Sbjct: 61 aattccacattttcagtatc 80
>RF00641;mir-154;ABRN01448850.1/16136-16215 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 47 ttaatcatagaggaaaatccacattttcggtatc 80
|||| ||||||||||||||||||||||| |||||
Sbjct: 47 ttaagcatagaggaaaatccacattttcagtatc 80
>RF00641;mir-154;AAQR01332677.1/6164-6240 30611:Otolemur garnettii
(small-eared galago)
Length = 77
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 20 ttccttctatgattacgggtttggtgattaatcatagaggaaaatccacatttt 73
||||||||||| |||| || || || |||||||||||||||||| ||||||||
Sbjct: 17 ttccttctatgtttacaggatttatggttaatcatagaggaaaattcacatttt 70
>RF00641;mir-154;AANG01662501.1/383-463 9685:Felis catus (domestic
cat)
Length = 81
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 47 ttaatcatagaggaaaatccacattttcg 75
|||||||||||||||||||||| ||||||
Sbjct: 48 ttaatcatagaggaaaatccacgttttcg 76
>RF00641;mir-154;AAFC03087120.1/1987-1908 9913:Bos taurus (cattle)
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 3 tatttaaaaggtagattttccttctatgattacgggtttggtgattaatcatagaggaaa 62
|||| ||||||| ||| ||||||||||| |||| || ||| ||| |||||||||||
Sbjct: 3 tattcaaaaggtggatattccttctatgtttacaggattgacagctaaacatagaggaaa 62
Query: 63 atccacatttt 73
|||||||||||
Sbjct: 63 atccacatttt 73
>RF00641;mir-154;AAQR01332677.1/6513-6587 30611:Otolemur garnettii
(small-eared galago)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 ggtatttaaaaggtagattttccttctatg 30
|||||||||||||| ||| |||||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatg 30
