miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054364.1/3334-3416 9813:Procavia capensis
(cape rock hyrax)
Length = 83
Score = 149 bits (75), Expect = 7e-36
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 2 ggttcctgcagagatggtagactatggaacgtaggctttgtgatttttgacctatgtaac 61
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 ggttcctgaagagatggtagactatggaacgtaggctttatgatttttgacctatgtaac 60
Query: 62 atggtccactaactctcagtatc 84
|||||||||||||||||||||||
Sbjct: 61 atggtccactaactctcagtatc 83
>RF00641;mir-154;AAIY01428934.1/1733-1815 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 83
Score = 133 bits (67), Expect = 4e-31
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 2 ggttcctgcagagatggtagactatggaacgtaggctttgtgatttttgacctatgtaac 61
|||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1 ggttcctgaagagatggtagactatggaacgtaggcgttatgatttttgacctatgtaac 60
Query: 62 atggtccactaactctcag 80
|||||||||||||||||||
Sbjct: 61 atggtccactaactctcag 79
>RF00641;mir-154;AAYZ01424895.1/367-448 9978:Ochotona princeps
(American pika)
Length = 82
Score = 107 bits (54), Expect = 2e-23
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 3 gttcctgcagagatggtagactatggaacgtaggctttgtgatttttgacctatgtaaca 62
||||||| |||| |||||||||||||||||||||| || | ||| ||||||||||||||
Sbjct: 1 gttcctgaagaggtggtagactatggaacgtaggcgttacgttttctgacctatgtaaca 60
Query: 63 tggtccactaactctcagtatc 84
||||||||||||||||||||||
Sbjct: 61 tggtccactaactctcagtatc 82
>RF00641;mir-154;AAGV020362609.1/5811-5889 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 49 tgacctatgtaacatggtccactaactctcag 80
|||| |||||||||||||||||||| ||||||
Sbjct: 44 tgacgtatgtaacatggtccactaattctcag 75
>RF00641;mir-154;ABRQ01054364.1/4611-4690 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 49 tgacctatgtaacatggtccactaactctcagtatc 84
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 45 tgacgtatgtaacacggtccactaaccctcagtatc 80
