miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054373.1/1454-1532 9813:Procavia capensis
(cape rock hyrax)
Length = 79
Score = 105 bits (53), Expect = 8e-23
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 11 gaggttgccctttgtatattcggttttttgatgtagaatatacaagggcaagctctctgt 70
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 13 gaggttgccctttgtatattcggttttttgacatagaatatacaagggcaagctctctgg 72
Query: 71 gagta 75
|||||
Sbjct: 73 gagta 77
>RF00641;mir-154;AAGV020362614.1/822-900 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 79
Score = 93.7 bits (47), Expect = 3e-19
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 3 ctcagagcgaggttgccctttgtatattcggttttttgatgtagaatatacaagggcaag 62
|||| ||||||||| |||||||| |||||||||| |||| || |||||||||||||||||
Sbjct: 5 ctcacagcgaggttaccctttgtgtattcggtttattgacgtggaatatacaagggcaag 64
Query: 63 ctctctgtgag 73
|||||||||||
Sbjct: 65 ctctctgtgag 75
>RF00641;mir-154;AAIY01699599.1/3364-3441 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 78
Score = 85.7 bits (43), Expect = 7e-17
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 9 gcgaggttgccctttgtatattcggttttttgatgtagaatatacaagggcaagctctct 68
||||||||||| || ||||||||||||| |||| || |||||||||||||||||||||||
Sbjct: 11 gcgaggttgcc-ttggtatattcggtttattgacgtggaatatacaagggcaagctctct 69
Query: 69 gtgagta 75
|||||||
Sbjct: 70 gtgagta 76
>RF00641;mir-154;ABRO01197048.1/1145-1223 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 79
Score = 79.8 bits (40), Expect = 4e-15
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 8 agcgaggttgccctttgtatattcggttttttgatgtagaatatacaagggcaagctctc 67
|||||||||||||||||||||||||| || || | | | ||||||||||||||||||||
Sbjct: 10 agcgaggttgccctttgtatattcggcttcttcacattggatatacaagggcaagctctc 69
Query: 68 tgtgagta 75
||||||||
Sbjct: 70 tgtgagta 77
>RF00641;mir-154;AAYZ01254084.1/2089-2167 9978:Ochotona princeps
(American pika)
Length = 79
Score = 73.8 bits (37), Expect = 3e-13
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 1 tactcagagcgaggttgccctttgtatattcggttttttgatgtagaatatacaagggca 60
||||||||||||||||||||| ||||||||| || | |||| | | ||||||||||||
Sbjct: 3 tactcagagcgaggttgccctgtgtatattccgtgtattgacctgcagtatacaagggca 62
Query: 61 agctctctgtgag 73
|||||||||||||
Sbjct: 63 agctctctgtgag 75
>RF00641;mir-154;AAGU02275630.1/1197-1275 9785:Loxodonta africana
(African savanna elephant)
Length = 79
Score = 73.8 bits (37), Expect = 3e-13
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 1 tactcagagcgaggttgccctttgtatattcggttttttgatgtagaatatacaagggca 60
|||| |||| |||||| || ||||||||||| |||| |||| | |||||||||||||||
Sbjct: 3 tacttagagtgaggttaccatttgtatattcagtttcttgacatggaatatacaagggca 62
Query: 61 agctctctgtgag 73
|||||||||||||
Sbjct: 63 agctctctgtgag 75
>RF00641;mir-154;AADB02234051.1/94-172 9606:Homo sapiens (human)
Length = 79
Score = 61.9 bits (31), Expect = 1e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 33 gttttttgatgtagaatatacaagggcaagctctctgtgagta 75
|||| |||| || ||||||||||||||||||||||||||||||
Sbjct: 35 gtttattgacgtggaatatacaagggcaagctctctgtgagta 77
