miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAKN02051949.1/133347-133425 10141:Cavia
porcellus (domestic guinea pig)
Length = 79
Score = 131 bits (66), Expect = 1e-30
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 2 ggtacttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacag 61
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtacctgaagagaggttgtctgtgatgagttcgctttattaatgacgaatataacacag 60
Query: 62 atggcctgttttcagtac 79
||||||||| ||||||||
Sbjct: 61 atggcctgtcttcagtac 78
>RF00641;mir-154;AAQR01664935.1/16813-16890 30611:Otolemur
garnettii (small-eared galago)
Length = 78
Score = 125 bits (63), Expect = 9e-29
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 2 ggtacttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacag 61
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtatttgagaagaggttgtctgtgatgagttcgctttattaatgacgaatataacacag 60
Query: 62 atggcctgttt 72
|||||||||||
Sbjct: 61 atggcctgttt 71
>RF00641;mir-154;ABRQ01054379.1/507-585 9813:Procavia capensis
(cape rock hyrax)
Length = 79
Score = 125 bits (63), Expect = 9e-29
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 6 cttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatgg 65
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5 cttgaggagaggctgtctgtgatgagttcgctttatcaatgacgaatataacacagatgg 64
Query: 66 cctgttttcagtacc 80
|||||| ||||||||
Sbjct: 65 cctgttctcagtacc 79
>RF00641;mir-154;AAYZ01254085.1/11201-11278 9978:Ochotona princeps
(American pika)
Length = 78
Score = 117 bits (59), Expect = 2e-26
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 8 tgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcc 67
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 6 tgaggagaggttgtctgtgatgagttcgctgtattaatgtcgaatataacacagatggcc 65
Query: 68 tgttttc 74
|||||||
Sbjct: 66 tgttttc 72
>RF00641;mir-154;AAGW01274484.1/405-482 9986:Oryctolagus cuniculus
(rabbit)
Length = 78
Score = 105 bits (53), Expect = 8e-23
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 8 tgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcc 67
||||| |||||||||||||||||||||||| |||||| | ||||||||||||||||||||
Sbjct: 6 tgaggggaggttgtctgtgatgagttcgctgtattaaagccgaatataacacagatggcc 65
Query: 68 tgttttcag 76
|||||||||
Sbjct: 66 tgttttcag 74
>RF00641;mir-154;AAGV020430602.1/10-84 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 75
Score = 85.7 bits (43), Expect = 8e-17
Identities = 57/59 (96%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 19 tgtctgtgatgagttcgctttattaatgacgaatataacacagatggcctgttttcagt 77
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 16 tgtctgtgatgagttcgctttatt-atgacgaatat-acacagatggcctgttttcagt 72
