miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00762;mir-412;AALT01091711.1/638-727 42254:Sorex araneus
(European shrew)
Length = 90
Score = 129 bits (65), Expect = 7e-30
Identities = 80/85 (94%)
Strand = Plus / Plus
Query: 1 ctggggtacaggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacc 60
||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 1 ctggggtacaggatggatggtcgaccagttggaaagtaattgtgtcgaatgtacttcacc 60
Query: 61 tggtccactagctgtccgtacccac 85
|||||||||||| ||||| ||||||
Sbjct: 61 tggtccactagccgtccgcacccac 85
>RF00762;mir-412;CABD01018504.1/52208-52298 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 91
Score = 127 bits (64), Expect = 3e-29
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 15 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccactagctg 74
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 16 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccactagccg 75
Query: 75 tccgtacccactgcag 90
|||||| || ||||||
Sbjct: 76 tccgtatccgctgcag 91
>RF00762;mir-412;ABDC01257675.1/5683-5773 30608:Microcebus murinus
(gray mouse lemur)
Length = 91
Score = 123 bits (62), Expect = 4e-28
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 11 ggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccacta 70
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 12 ggacggatggtcgaccagttggaaagtaattgtccccaatgtacttcacctggtccacta 71
Query: 71 gctgtccgtacccactgc 88
|| |||||||||||||||
Sbjct: 72 gccgtccgtacccactgc 89
>RF00762;mir-412;AAKN02051949.1/132908-132997 10141:Cavia
porcellus (domestic guinea pig)
Length = 90
Score = 121 bits (61), Expect = 2e-27
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 1 ctggggtacaggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacc 60
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 ctggggtagcggacggatggtcgaccagttggaaagtaattgtctctaatgtacttcacc 60
Query: 61 tggtccactagctgtccgtacccac 85
|||||||||||| ||| || |||||
Sbjct: 61 tggtccactagccgtctgtgcccac 85
>RF00762;mir-412;ABRQ01054379.1/32-122 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 97.6 bits (49), Expect = 2e-20
Identities = 74/81 (91%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 10 aggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccact 69
|||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 12 aggatggatggtcgaccagt-ggaaagtaattgtttataatgtacttcacctggtccact 70
Query: 70 agctgtccgtacccactgcag 90
||| ||| | ||||||||||
Sbjct: 71 agccgtctgcgcccactgcag 91
>RF00762;mir-412;AAIY01437686.1/1059-969 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 91
Score = 89.7 bits (45), Expect = 6e-18
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 18 tggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccactagctgtcc 77
|||||||||||||||||||||||| ||| ||||||| |||||||||||||||||| ||
Sbjct: 19 tggtcgaccagttggaaagtaattttttataatgtatttcacctggtccactagccatca 78
Query: 78 gtacccactgcag 90
|| ||||||||||
Sbjct: 79 gtgcccactgcag 91
>RF00762;mir-412;AAEX02019639.1/169950-170039 9615:Canis lupus
familiaris (dog)
Length = 90
Score = 63.9 bits (32), Expect = 3e-10
Identities = 42/44 (95%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 1 ctggggtacaggacggatggtcgaccagttggaaagtaattgtt 44
||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 ctggggtacaggacggatggtcgacca-atggaaagtaattgtt 43
