miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00737;mir-322;AAKN02053360.1/159470-159387 10141:Cavia
porcellus (domestic guinea pig)
Length = 84
Score = 117 bits (59), Expect = 3e-26
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 11 cgaggggatgcagcagcaattcatgttttgaagtgctttaaacggttcaaaacgtgaggc 70
|||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 1 cgaggggatgcagcagcaattcatgttttgaagtattctaaactgttcaaaacgtgaggc 60
Query: 71 gctgctataccccct 85
|||||||||||||||
Sbjct: 61 gctgctataccccct 75
>RF00737;mir-322;AAGU02249221.1/884-801 9785:Loxodonta africana
(African savanna elephant)
Length = 84
Score = 117 bits (59), Expect = 3e-26
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 11 cgaggggatgcagcagcaattcatgttttgaagtgctttaaacggttcaaaacgtgaggc 70
|||||||||||||||||||||||||||||| |||||| || | |||||||||||||||||
Sbjct: 1 cgaggggatgcagcagcaattcatgttttggagtgctctacaaggttcaaaacgtgaggc 60
Query: 71 gctgctataccccct 85
|||||||||||||||
Sbjct: 61 gctgctataccccct 75
>RF00737;mir-322;AAGW01455164.1/423-340 9986:Oryctolagus cuniculus
(rabbit)
Length = 84
Score = 103 bits (52), Expect = 4e-22
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 11 cgaggggatgcagcagcaattcatgttttgaagtgctttaaacggttcaaaacgtgaggc 70
||||||||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct: 1 cgaggggatgcagcagcaattcatgttttgaagtgctatgattcattcaaaacgtgaggc 60
Query: 71 gctgctatacccccttgcgaggaa 94
||||||||||||||| ||| ||||
Sbjct: 61 gctgctataccccctcgcggggaa 84
>RF00737;mir-322;ABRO01386381.1/1280-1196 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 85
Score = 81.8 bits (41), Expect = 1e-15
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 12 gaggggatgcagcagcaattcatgttttgaagtgcttt-aaacggttcaaaacgtgaggc 70
||||| ||||||||||||||||||||||| ||| | || |||||||||||||||||| ||
Sbjct: 2 gagggaatgcagcagcaattcatgttttggagtaccttgaaacggttcaaaacgtgaagc 61
Query: 71 gctgctata 79
|||||||||
Sbjct: 62 gctgctata 70
>RF00737;mir-322;ABRQ01123748.1/1266-1183 9813:Procavia capensis
(cape rock hyrax)
Length = 84
Score = 61.9 bits (31), Expect = 1e-09
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 11 cgaggggatgcagcagcaattcatgttttgaagtgctttaaacggttcaaaacgtgaggc 70
|||| |||| |||||||||||||||||||| | || | || | |||||||||||||| |
Sbjct: 1 cgagtggattcagcagcaattcatgttttggaatgttctacaaagttcaaaacgtgagtc 60
Query: 71 gctgctataccccct 85
|||||| ||||||||
Sbjct: 61 gctgctctaccccct 75
>RF00737;mir-322;AAHY01210347.1/3510-3428 10090:Mus musculus
(house mouse)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 tgcagcagcaattcatgttttg 40
||||||||||||||||||||||
Sbjct: 9 tgcagcagcaattcatgttttg 30
