miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00803;mir-425;ABRQ01082424.1/2274-2358 9813:Procavia capensis
(cape rock hyrax)
Length = 85
Score = 161 bits (81), Expect = 2e-39
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 2 aaagcgctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatcggga 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1 aaagcgctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatctgga 60
Query: 62 atgtcgtgtccgcccagtgctcttt 86
|||||||||||||||||||||||||
Sbjct: 61 atgtcgtgtccgcccagtgctcttt 85
>RF00803;mir-425;ABQO010558253.1/28-112 9315:Macropus eugenii
(tammar wallaby)
Length = 85
Score = 99.6 bits (50), Expect = 6e-21
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 2 aaagcgctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatcggga 61
|||||||||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct: 1 aaagcgctttggaatgacacgatcactcccgttgagcggacagccaagaagccatcgggc 60
Query: 62 atgtcgtgtc 71
|| |||||||
Sbjct: 61 atatcgtgtc 70
>RF00803;mir-425;ABQF01037869.1/779-863 59729:Taeniopygia guttata
Length = 85
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 7 gctttggaatgacacgatcactcccgttgagtgggcacccaagaagccatcgggaatgtc 66
|||||||||||||||||||||||||| |||| ||| ||| |||||||||| |||||
Sbjct: 6 gctttggaatgacacgatcactcccgctgagccagcagccagagagccatcggggatgtc 65
Query: 67 gtgtc 71
|||||
Sbjct: 66 gtgtc 70
>RF00803;mir-425;AAWZ01017461.1/6392-6309 28377:Anolis
carolinensis (green anole)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 tttggaatgacacgatcactcccgttgag 37
|||||||||||||||||||||||| ||||
Sbjct: 8 tttggaatgacacgatcactcccgctgag 36
>RF00803;mir-425;AANN01668557.1/686-771 9365:Erinaceus europaeus
(western European hedgehog)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 11 tggaatgacacgatcactcccgttgagtgggc 42
|||||||||||||||||||||| |||| ||||
Sbjct: 10 tggaatgacacgatcactcccgctgagcgggc 41
>RF00803;mir-425;AAVX01021859.1/1356-1438 7868:Callorhinchus milii
(ghost shark)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tggaatgacacgatcactcccg 32
||||||||||||||||||||||
Sbjct: 10 tggaatgacacgatcactcccg 31
