miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00723;mir-448;AAPE01293616.1/2463-2573 59463:Myotis lucifugus
(little brown bat)
Length = 111
Score = 123 bits (62), Expect = 5e-28
Identities = 86/95 (90%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 4 gggaggttgaacatcctgcatagtgctgccaggaaatccctattttatactaannnnnnn 63
|||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 4 gggaggttgaacatcctgcatagtgctgccaggaaatcccta-tttatactaagagtggg 62
Query: 64 ttggctggttgcatatgtaggatgtcccatctccc 98
||||||||||||||||||||||||||||||||||
Sbjct: 63 ctggctggttgcatatgtaggatgtcccatctccc 97
>RF00723;mir-448;ABRO01488018.1/1178-1067 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 112
Score = 103 bits (52), Expect = 5e-22
Identities = 81/93 (87%)
Strand = Plus / Plus
Query: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctattttatactaannnnnnnt 64
||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 5 ggaggttgaacatcctgcatagtgctgccaggaaaaccctattccatactaagagggagc 64
Query: 65 tggctggttgcatatgtaggatgtcccatctcc 97
|||||| ||||||||||||||||||||||||||
Sbjct: 65 tggctgtttgcatatgtaggatgtcccatctcc 97
>RF00723;mir-448;ABRQ01383699.1/6043-6154 9813:Procavia capensis
(cape rock hyrax)
Length = 112
Score = 103 bits (52), Expect = 5e-22
Identities = 93/109 (85%)
Strand = Plus / Plus
Query: 3 ggggaggttgaacatcctgcatagtgctgccaggaaatccctattttatactaannnnnn 62
||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct: 3 ggggaggttgaacatcctgcatagtgctgccaggaaacccctatttcgtaataagagggg 62
Query: 63 nttggctggttgcatatgtaggatgtcccatctccccacccacatcatc 111
||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 63 gcaggctggttgcatatgtaggatgtcccatctccctgcccacttcatc 111
>RF00723;mir-448;AAKN02039763.1/15790-15679 10141:Cavia porcellus
(domestic guinea pig)
Length = 112
Score = 87.7 bits (44), Expect = 3e-17
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctattttatactaannnnnnnt 64
|||||||||||||||||||| ||||||||| ||||||||| | | |||||||
Sbjct: 5 ggaggttgaacatcctgcatggtgctgccacgaaatccctttgtcatactaagaggggac 64
Query: 65 tggctggttgcatatgtaggatgtcccatctcc 97
|||||||||||| ||||||||||||||||||||
Sbjct: 65 tggctggttgcacatgtaggatgtcccatctcc 97
>RF00723;mir-448;AALT01302712.1/526-635 42254:Sorex araneus
(European shrew)
Length = 110
Score = 73.8 bits (37), Expect = 4e-13
Identities = 81/96 (84%), Gaps = 4/96 (4%)
Strand = Plus / Plus
Query: 4 gggaggttgaacatcctgcatagtgctgccagg-aaatccctattttatactaannnnnn 62
||||||||||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct: 4 gggaggttgaacatcctgcatagtgctgccaggaaaatccc---gttatagtaaaagggc 60
Query: 63 nttggctggttgcatatgtaggatgtcccatctccc 98
|| |||||||||||||||||||||||||||||||
Sbjct: 61 actgactggttgcatatgtaggatgtcccatctccc 96
>RF00723;mir-448;ABRN01082043.1/467-578 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 112
Score = 67.9 bits (34), Expect = 3e-11
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 3 ggggaggttgaacatcctgcatagtgctgccaggaaatccctattttatactaa 56
||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 3 ggggaggctgaacatcctgcatagtaatcacaggaaatccctattttatactaa 56
>RF00723;mir-448;ABVD01951229.1/707-778 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 72
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 16 atcctgcatagtgctgccaggaaatccctattttata 52
|||||||||| ||||||||||||| ||||||| ||||
Sbjct: 1 atcctgcataatgctgccaggaaacccctattatata 37
