miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00711;mir-449;ABRO01253740.1/3377-3287 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 91
Score = 133 bits (67), Expect = 4e-31
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 1 tgtgtgatgggttggcagtgtattgttagctggttgaatatgtgagtgccatcagctaac 60
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 4 tgtgtgatgggttggcagtgtattgttagctggttgaatatgtgaatggcatcagctaac 63
Query: 61 atgcaactgctatcttattgcat 83
||||| ||||||||| |||||||
Sbjct: 64 atgcacctgctatctcattgcat 86
>RF00711;mir-449;AAGW01346249.1/4500-4410 9986:Oryctolagus
cuniculus (rabbit)
Length = 91
Score = 117 bits (59), Expect = 2e-26
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 1 tgtgtgatgggttggcagtgtattgttagctggttgaatatgtgagtgccatcagctaac 60
||||||||| | |||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 4 tgtgtgatgaggtggcagtgtattgttagctggttgaatatgtgtgtgatatcagctaac 63
Query: 61 atgcaactgctatcttattgcat 83
|| ||||||||||||||||||||
Sbjct: 64 atacaactgctatcttattgcat 86
>RF00711;mir-449;ABRQ01364111.1/2302-2212 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 117 bits (59), Expect = 2e-26
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 1 tgtgtgatgggttggcagtgtattgttagctggttgaatatgtgagtgccatcagctaac 60
||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||
Sbjct: 4 tgtgtgatgggttggcagtgtattgttagctggttgaattagtaagtgacatcagctaac 63
Query: 61 atgcaactgctatcttattgcat 83
||||| |||||| ||||||||||
Sbjct: 64 atgcagctgctaacttattgcat 86
>RF00711;mir-449;AALT01534765.1/2819-2909 42254:Sorex araneus
(European shrew)
Length = 91
Score = 107 bits (54), Expect = 2e-23
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 2 gtgtgatgggttggcagtgtattgttagctggttgaatatgtgagtgccatcagctaaca 61
|||||||| |||||||||||||||||||||||||| |||||||| | ||||||||||||
Sbjct: 5 gtgtgatgagttggcagtgtattgttagctggttggatatgtgaatagcatcagctaaca 64
Query: 62 tgcaactgctatcttattgcat 83
|||||||||| ||||||||||
Sbjct: 65 tgcaactgcttgcttattgcat 86
>RF00711;mir-449;AAIY01660884.1/5468-5558 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 91
Score = 103 bits (52), Expect = 4e-22
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 3 tgtgatgggttggcagtgtattgttagctggttgaatatgtgagtgccatcagctaacat 62
||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct: 6 tgtgatgagttggcagtgtattgttagctggttgaatatgtgagtagcaccagctaacgt 65
Query: 63 gcaactgctatcttattgca 82
||| |||||| |||||||||
Sbjct: 66 gcagctgctaacttattgca 85
>RF00711;mir-449;CAAA01026551.1/5646-5736 10090:Mus musculus
(house mouse)
Length = 91
Score = 99.6 bits (50), Expect = 6e-21
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 1 tgtgtgatgggttggcagtgtattgttagctggttgaatatgtgagtgccatcagctaac 60
|||||||||| |||||||||||||||||||||||||| |||||||| | || ||||||||
Sbjct: 4 tgtgtgatggcttggcagtgtattgttagctggttgagtatgtgagcggcaccagctaac 63
Query: 61 atgcaactgctatcttattgca 82
|||| |||||| || |||||||
Sbjct: 64 atgcgactgctctcctattgca 85
>RF00711;mir-449;AAKN02031494.1/12810-12899 10141:Cavia porcellus
(domestic guinea pig)
Length = 90
Score = 85.7 bits (43), Expect = 9e-17
Identities = 74/83 (89%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 tgtgtgatgggttggcagtgtattgttagctggttgaatatgtgagtgccatcagctaac 60
||||||||||| ||||||||||||||||||||||||||||| | | | | ||||||||
Sbjct: 4 tgtgtgatgggctggcagtgtattgttagctggttgaatatat-attattagcagctaac 62
Query: 61 atgcaactgctatcttattgcat 83
|| ||||||||||||||||||||
Sbjct: 63 atacaactgctatcttattgcat 85
>RF00711;mir-449;AAFR03035385.1/18957-18868 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 90
Score = 75.8 bits (38), Expect = 8e-14
Identities = 73/83 (87%), Gaps = 5/83 (6%)
Strand = Plus / Plus
Query: 3 tgtgatgggttggcagtgtattgttagctggttgaatatgtga--gtgccatcagctaac 60
||||||||| ||||||||||||||||||||||||| ||| ||| |||| ||||||||
Sbjct: 6 tgtgatgggatggcagtgtattgttagctggttgactatctgaacgtgc---cagctaac 62
Query: 61 atgcaactgctatcttattgcat 83
|||||||||||||| |||||||
Sbjct: 63 atgcaactgctatcccattgcat 85
>RF00711;mir-449;ABQO010597990.1/363-452 9315:Macropus eugenii
(tammar wallaby)
Length = 90
Score = 73.8 bits (37), Expect = 3e-13
Identities = 71/81 (87%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 3 tgtgatgggttggcagtgtattgttagctggttgaatatgtgagtgccatcagctaacat 62
||||||||| ||||||||||||||||||||||||||||| ||| || | |||||| ||
Sbjct: 6 tgtgatgggatggcagtgtattgttagctggttgaatatctgaatg-taccagctactat 64
Query: 63 gcaactgctatcttattgcat 83
||||||||| || ||||||||
Sbjct: 65 gcaactgctgtcctattgcat 85
>RF00711;mir-449;AAPN01209390.1/1892-1981 9258:Ornithorhynchus
anatinus (platypus)
Length = 90
Score = 46.1 bits (23), Expect = 7e-05
Identities = 63/75 (84%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 12 ttggcagtgtattgttagctggttgaatatgtgagtgccatcagctaacatgcaactgct 71
|||||||||| ||||||||||||||||||| | | || || ||||| ||| || |||||
Sbjct: 15 ttggcagtgt-ttgttagctggttgaatatttaaatggcaccagctgacagacagctgct 73
Query: 72 atcttattgcatgta 86
|| |||||||||||
Sbjct: 74 ttcctattgcatgta 88
