miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00711;mir-449;AAGU02394433.1/7316-7227 9785:Loxodonta africana
(African savanna elephant)
Length = 90
Score = 147 bits (74), Expect = 3e-35
Identities = 86/90 (95%)
Strand = Plus / Plus
Query: 1 tgacctgaatcaggtaggcagtgtattgttagctggctgctttgggtcaattcagcagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgacctgaatcaggtaggcagtgtattgttagctggctgctttgggtcaattcagcagcc 60
Query: 61 acaactgccctgccacttgcttctggataa 90
|| ||| | |||||||||||||| ||||||
Sbjct: 61 acgactacgctgccacttgcttccggataa 90
>RF00711;mir-449;ABRQ01364111.1/2424-2335 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 145 bits (73), Expect = 1e-34
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 6 tgaatcaggtaggcagtgtattgttagctggctgctttgggtcaattcagcagccacaac 65
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 6 tgaatcaggtaggcagtgtattgttagctggctgctttgggtcagttcagcagccacaac 65
Query: 66 tgccctgccacttgcttctggataa 90
| ||||||||||||||||||||||
Sbjct: 66 tatcctgccacttgcttctggataa 90
>RF00711;mir-449;AALT01534765.1/2698-2787 42254:Sorex araneus
(European shrew)
Length = 90
Score = 135 bits (68), Expect = 1e-31
Identities = 80/84 (95%)
Strand = Plus / Plus
Query: 4 cctgaatcaggtaggcagtgtattgttagctggctgctttgggtcaattcagcagccaca 63
||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 4 cctgagtcaggtaggcagtgtattgttagctggctgctttggatcagttcagcagccaca 63
Query: 64 actgccctgccacttgcttctgga 87
||| ||||||||||||||||||||
Sbjct: 64 actaccctgccacttgcttctgga 87
>RF00711;mir-449;AACZ02174908.1/1653-1741 9598:Pan troglodytes
(chimpanzee)
Length = 89
Score = 125 bits (63), Expect = 1e-28
Identities = 76/79 (96%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 1 tgacctgaatcaggtaggcagtgtattgttagctggctgctttgggtcaattcagcagcc 60
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 1 tgacctgaatcaggtaggcagtgtattgttagctggctgc-ttgggtcaagtcagcagcc 59
Query: 61 acaactgccctgccacttg 79
|||||| ||||||||||||
Sbjct: 60 acaactaccctgccacttg 78
>RF00711;mir-449;AAQR01454395.1/190-101 30611:Otolemur garnettii
(small-eared galago)
Length = 90
Score = 111 bits (56), Expect = 2e-24
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 7 gaatcaggtaggcagtgtattgttagctggctgctttgggtcaattcagcagccacaact 66
|||||||||||||||||||||||||||||||||||||| || | || ||||||| ||||
Sbjct: 7 gaatcaggtaggcagtgtattgttagctggctgctttgcatcgagtccgcagccataact 66
Query: 67 gccctgccacttgcttctggataa 90
|||||||||||||||||||||||
Sbjct: 67 accctgccacttgcttctggataa 90
>RF00711;mir-449;ABRO01253740.1/3498-3409 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 90
Score = 107 bits (54), Expect = 3e-23
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 1 tgacctgaatcaggtaggcagtgtattgttagctggctgctttgggtcaattcagcagcc 60
||||| || ||||||||||||||| |||||||||||||||||||| ||| |||||||||
Sbjct: 1 tgacccgagtcaggtaggcagtgtgttgttagctggctgctttggaccaagtcagcagcc 60
Query: 61 acaactgccctgccacttgcttctgg 86
||||| |||||||||||||||||||
Sbjct: 61 acaacgaccctgccacttgcttctgg 86
>RF00711;mir-449;AABR04048554.1/12526-12437 10116:Rattus
norvegicus (Norway rat)
Length = 90
Score = 99.6 bits (50), Expect = 6e-21
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 10 tcaggtaggcagtgtattgttagctggctgctttgggtcaattcagcagccacaactgcc 69
||||||||||||||| ||||||||||||||| |||||| || | |||||||||| || ||
Sbjct: 10 tcaggtaggcagtgtgttgttagctggctgcgttgggttaagtaagcagccacagctacc 69
Query: 70 ctgccacttgcttctgga 87
||||||||||||||||||
Sbjct: 70 ctgccacttgcttctgga 87
>RF00711;mir-449;AAGW01346249.1/4621-4532 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 99.6 bits (50), Expect = 6e-21
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 1 tgacctgaatcaggtaggcagtgtattgttagctggctgctttgggtcaattcagcagcc 60
||||||||| ||||||||||||||| |||||| ||||||||||||||||| |||||||||
Sbjct: 1 tgacctgaagcaggtaggcagtgtaatgttagttggctgctttgggtcaagtcagcagcc 60
Query: 61 acaactgccctgccacttgcttctgg 86
||| | | ||||||||||| |||||
Sbjct: 61 acaggtacgctgccacttgcctctgg 86
>RF00711;mir-449;ABQO010597990.1/221-310 9315:Macropus eugenii
(tammar wallaby)
Length = 90
Score = 75.8 bits (38), Expect = 9e-14
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 10 tcaggtaggcagtgtattgttagctggctgctttgggtcaattcagcagccacaactgcc 69
||||||||||||||| ||| |||||||||||| || ||| |||||||| |||||| ||
Sbjct: 10 tcaggtaggcagtgtgctgtaagctggctgcttgggttcagttcagcagtcacaaccacc 69
Query: 70 ctgccacttgcttctgga 87
|||||||||||| |||||
Sbjct: 70 ctgccacttgctcctgga 87
>RF00711;mir-449;CAAA01026551.1/5526-5613 10090:Mus musculus
(house mouse)
Length = 88
Score = 69.9 bits (35), Expect = 6e-12
Identities = 65/74 (87%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 13 ggtaggcagtgtattgttagctggctgctttgggtcaattcagcagccacaactgccctg 72
|||||||||||| |||||||||||||| |||||||| ||||||||||| || |||||
Sbjct: 13 ggtaggcagtgt--tgttagctggctgcgttgggtcaggccagcagccacagctaccctg 70
Query: 73 ccacttgcttctgg 86
|||||| |||||||
Sbjct: 71 ccacttccttctgg 84
>RF00711;mir-449;AAFR03035385.1/19098-19010 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 89
Score = 60.0 bits (30), Expect = 6e-09
Identities = 67/78 (85%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 10 tcaggtaggcagtgtattgttagctggctgctttgggtcaattcagcagccacaactgcc 69
|||||||||||||| ||| |||||||||||| || |||||| ||||| || ||||||
Sbjct: 10 tcaggtaggcagtgcgctgtaagctggctgctt-ggctcaatttagcagtcaggactgcc 68
Query: 70 ctgccacttgcttctgga 87
|||||||||||| |||||
Sbjct: 69 ctgccacttgctcctgga 86
>RF00711;mir-449;AAPN01209390.1/1753-1843 9258:Ornithorhynchus
anatinus (platypus)
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 14 gtaggcagtgtattgttagctggctgctttgggtcaattcagcagccac 62
||||||||||| |||| ||||||||||||| || |||||||||||||
Sbjct: 14 gtaggcagtgtgatgtttgctggctgctttgaatcgattcagcagccac 62
>RF00711;mir-449;ABRR01198614.1/1669-1591 30538:Lama pacos
(alpaca)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Plus
Query: 1 tgacctgaatcaggtaggcagtgtattgttagctggctgctt 42
||||||||||||| ||| ||||||||||||||||| ||||||
Sbjct: 2 tgacctgaatcag-tag-cagtgtattgttagctgactgctt 41
>RF00711;mir-449;AAQQ01588713.1/2879-2788 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 10 tcaggtaggcagtgtattgttagctggctg 39
|||||||||||||| |||| ||||||||||
Sbjct: 10 tcaggtaggcagtgcattgctagctggctg 39
>RF00711;mir-449;AAVX01082942.1/500-413 7868:Callorhinchus milii
(ghost shark)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 taggcagtgtattgttagctggctgc 40
||||||||||| ||||||||||||||
Sbjct: 15 taggcagtgtaatgttagctggctgc 40
