miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00711;mir-449;ABRN01386480.1/1100-1009 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 92
Score = 133 bits (67), Expect = 5e-31
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 13 tgtgtcaggtaggcagtgcatctctagctggctgttaaaatttctttttaacagttgcta 72
||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||
Sbjct: 6 tgtgtcaggtaggcagtgcatctttagctggctgttataatttcattttaacagttgcta 65
Query: 73 gttgcactcccctctgttg 91
|||||||||||||||||||
Sbjct: 66 gttgcactcccctctgttg 84
>RF00711;mir-449;AAQQ01588713.1/2879-2788 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 92
Score = 121 bits (61), Expect = 2e-27
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 12 atgtgtcaggtaggcagtgcatctctagctggctgttaaaatttctttttaacagttgct 71
|||||||||||||||||||||| |||||||||||||| |||||| | ||||||||||||
Sbjct: 5 atgtgtcaggtaggcagtgcattgctagctggctgttagaatttcatcttaacagttgct 64
Query: 72 agttgcactcccctctgttgcattc 96
||||||||||||||||| |||||||
Sbjct: 65 agttgcactcccctctgctgcattc 89
>RF00711;mir-449;AAPY01138081.1/497-406 37347:Tupaia belangeri
(northern tree shrew)
Length = 92
Score = 91.7 bits (46), Expect = 2e-18
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 12 atgtgtcaggtaggcagtgcatctctagctggctgttaaaatttctttttaacagttgct 71
||||||||||| ||||||||| ||||||||||||| |||| | ||||||||||||||
Sbjct: 5 atgtgtcaggttggcagtgcaatgctagctggctgttgtaattccattttaacagttgct 64
Query: 72 agttgcactcccctctgttgcattca 97
|||| |||| ||||||||||||||||
Sbjct: 65 agttacactgccctctgttgcattca 90
>RF00711;mir-449;AAQR01454395.1/1341-1250 30611:Otolemur garnettii
(small-eared galago)
Length = 92
Score = 91.7 bits (46), Expect = 2e-18
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 12 atgtgtcaggtaggcagtgcatctctagctggctgttaaaatttctttttaacagttgct 71
||||||| |||||||||||||| ||||||||||||| |||||| |||||||||||||
Sbjct: 5 atgtgtcgggtaggcagtgcattgctagctggctgttgtaatttcactttaacagttgct 64
Query: 72 agttgcactcccctctgt 89
|||||||||||||||||
Sbjct: 65 ggttgcactcccctctgt 82
>RF00711;mir-449;AANN01422130.1/1413-1504 9365:Erinaceus europaeus
(western European hedgehog)
Length = 92
Score = 87.7 bits (44), Expect = 3e-17
Identities = 77/88 (87%)
Strand = Plus / Plus
Query: 12 atgtgtcaggtaggcagtgcatctctagctggctgttaaaatttctttttaacagttgct 71
|||||||||| ||||||||||| |||||||||||||| | || ||||||||| ||||
Sbjct: 5 atgtgtcagggaggcagtgcattactagctggctgttatcgtgtcattttaacagctgct 64
Query: 72 agttgcactcccctctgttgcattcata 99
||||||||||||| ||||||||| ||||
Sbjct: 65 agttgcactcccccctgttgcatgcata 92
>RF00711;mir-449;ABVD01243309.1/246-153 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 94
Score = 85.7 bits (43), Expect = 1e-16
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 12 atgtgtcaggtaggcagtgcatctctagctggctgttaaaatttctttttaacagttgct 71
|||||||||||||||||||||| ||| |||||||| | | |||| ||||||||||||||
Sbjct: 5 atgtgtcaggtaggcagtgcattgctatctggctgtcacagtttcattttaacagttgct 64
Query: 72 agttgcactcccctc 86
|| ||||||||||||
Sbjct: 65 aggtgcactcccctc 79
>RF00711;mir-449;AAWR02016364.1/4252-4337 9796:Equus caballus
(horse)
Length = 86
Score = 83.8 bits (42), Expect = 4e-16
Identities = 74/85 (87%), Gaps = 6/85 (7%)
Strand = Plus / Plus
Query: 12 atgtgtcaggtaggcagtgcatctctagctggctgttaaaatttctttttaacagttgct 71
|||||||||||||||||||||| |||||||||| ||||| ||||||||||||||
Sbjct: 5 atgtgtcaggtaggcagtgcattgctagctggct------atttcattttaacagttgct 58
Query: 72 agttgcactcccctctgttgcattc 96
||||| ||||||||||||||||||
Sbjct: 59 ggttgcgctcccctctgttgcattc 83
>RF00711;mir-449;AAKN02031494.1/12165-12258 10141:Cavia porcellus
(domestic guinea pig)
Length = 94
Score = 81.8 bits (41), Expect = 2e-15
Identities = 74/84 (88%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 12 atgtgtcaggtaggcagtgcatctctagctggctgttaaaatttct--ttttaacagttg 69
||||| ||| |||||||||||| ||||||||||||||| |||| | ||||| ||||||
Sbjct: 5 atgtgacagataggcagtgcattgctagctggctgttaagatttttcattttagcagttg 64
Query: 70 ctagttgcactcccctctgttgca 93
||||||||||||| ||||||||||
Sbjct: 65 ctagttgcactcctctctgttgca 88
>RF00711;mir-449;ABRP01028864.1/1010-924 132908:Pteropus vampyrus
(large flying fox)
Length = 87
Score = 79.8 bits (40), Expect = 6e-15
Identities = 76/88 (86%), Gaps = 5/88 (5%)
Strand = Plus / Plus
Query: 12 atgtgtcaggtaggcagtgcatctctagctggctgttaaaatttctttttaacagttgct 71
|||||||||||||||||| ||| |||||||||||||| |||||| |||||| |||
Sbjct: 5 atgtgtcaggtaggcagtacattgctagctggctgttataatttc-----aacagtggct 59
Query: 72 agttgcactcccctctgttgcattcata 99
||||| |||||||||||||||||||||
Sbjct: 60 agttgtgctcccctctgttgcattcata 87
>RF00711;mir-449;ABBA01015737.1/36023-35937 9606:Homo sapiens
(human)
Length = 87
Score = 65.9 bits (33), Expect = 1e-10
Identities = 74/86 (86%), Gaps = 5/86 (5%)
Strand = Plus / Plus
Query: 12 atgtgtcaggtaggcagtgcatctctagctggctgttaaaatttctttttaacagttgct 71
||||||||||||||||||| || ||||| ||||||||| | |||||||||| |||
Sbjct: 5 atgtgtcaggtaggcagtgtattgctagc-ggctgttaa----tgattttaacagtagct 59
Query: 72 agttgcactcccctctgttgcattca 97
||||||||||| ||||||||||||||
Sbjct: 60 agttgcactcctctctgttgcattca 85
>RF00711;mir-449;CABD01761585.1/586-500 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 87
Score = 65.9 bits (33), Expect = 1e-10
Identities = 74/86 (86%), Gaps = 5/86 (5%)
Strand = Plus / Plus
Query: 12 atgtgtcaggtaggcagtgcatctctagctggctgttaaaatttctttttaacagttgct 71
||||||||||||||||||| || ||||| ||||||||| | || ||||||||||||
Sbjct: 5 atgtgtcaggtaggcagtgtattgctagc-ggctgttaataatt----ttaacagttgct 59
Query: 72 agttgcactcccctctgttgcattca 97
||||||| ||| ||||||||||||||
Sbjct: 60 agttgcattcctctctgttgcattca 85
>RF00711;mir-449;AAHY01110258.1/31074-30983 10090:Mus musculus
(house mouse)
Length = 92
Score = 58.0 bits (29), Expect = 2e-08
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 13 tgtgtcaggtaggcagtgcatctctagctggctgttaaaatttctttttaacagttgcta 72
||||||||| ||||||||||| |||||||||||||| || || | |||||||||||
Sbjct: 6 tgtgtcaggcaggcagtgcattgctagctggctgttagaactttatcccaacagttgcta 65
Query: 73 gttgcactcccctctgttgca 93
| |||||| ||||||| ||||
Sbjct: 66 gctgcactaccctctgctgca 86
>RF00711;mir-449;ACBE01026175.1/1166-1235 9685:Felis catus
(domestic cat)
Length = 70
Score = 52.0 bits (26), Expect = 1e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 21 gtaggcagtgcatctctagctggctgttaaaatttctttttaacagttgc 70
|||||||| |||| |||||||||||||| ||||| |||||||||||||
Sbjct: 3 gtaggcagcgcattgctagctggctgttactatttcattttaacagttgc 52
