miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00708;mir-450;AACN010723377.1/501-591 9615:Canis lupus
familiaris (dog)
Length = 91
Score = 133 bits (67), Expect = 4e-31
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 5 tttttgcgatgtgttcctaatatgcagtataaatatattgggagcattttgcatgcatgg 64
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 17 tttttgcgatgtgttcctaatatgcagtatgaacatattgggagcattttgcatgcatgg 76
Query: 65 ttttgtatcaatata 79
|||||||||||||||
Sbjct: 77 ttttgtatcaatata 91
>RF00708;mir-450;AANU01115741.1/25269-25359 9544:Macaca mulatta
(rhesus monkey)
Length = 91
Score = 101 bits (51), Expect = 1e-21
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 5 tttttgcgatgtgttcctaatatgcagtataaatatattgggagcattttgcatgcatgg 64
|||||||||||||||||||||||| | |||||||||||||||| ||||||||||| | |
Sbjct: 17 tttttgcgatgtgttcctaatatgtactataaatatattgggaacattttgcatgtgtag 76
Query: 65 ttttgtatcaatata 79
|||||||||||||||
Sbjct: 77 ttttgtatcaatata 91
>RF00708;mir-450;ABRQ01123746.1/420-330 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 93.7 bits (47), Expect = 3e-19
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 1 actatttttgcgatgtgttcctaatatgcagtataaatatattgggagcattttgcatgc 60
|||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 13 actatttttgtgatgtgttcctaatattgtgtataaatatattgggaacattttgcattt 72
Query: 61 atggttttgtatcaatata 79
||||||||||||||||||
Sbjct: 73 gtggttttgtatcaatata 91
>RF00708;mir-450;AAYZ01306302.1/1275-1185 9978:Ochotona princeps
(American pika)
Length = 91
Score = 91.7 bits (46), Expect = 1e-18
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 5 tttttgcgatgtgttcctaatatgcagtataaatatattgggagcattttgcatgcatgg 64
|||||||||| ||||||||||||||| ||||| |||||||||| |||||||||||||| |
Sbjct: 17 tttttgcgatatgttcctaatatgcactataactatattgggaacattttgcatgcatag 76
Query: 65 ttttgt 70
||||||
Sbjct: 77 ttttgt 82
>RF00708;mir-450;AAGV020284255.1/3919-3829 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 91
Score = 89.7 bits (45), Expect = 5e-18
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 1 actatttttgcgatgtgttcctaatatgcagtataaatatattgggagcattttgcatgc 60
|||||||||| ||||||||||||||||| | ||||| | |||||||| ||||||||| |
Sbjct: 13 actatttttgtgatgtgttcctaatatgaaatataagtgtattgggaatattttgcatcc 72
Query: 61 atggttttgtatcaata 77
|||||||||||||||||
Sbjct: 73 atggttttgtatcaata 89
>RF00708;mir-450;AACN010723377.1/367-457 9615:Canis lupus
familiaris (dog)
Length = 91
Score = 87.7 bits (44), Expect = 2e-17
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 1 actatttttgcgatgtgttcctaatatgcagtataaatatattgggagcattttgcatgc 60
|||||||||||||||||||||||||||| | ||||| | |||||||| |||||||||| |
Sbjct: 13 actatttttgcgatgtgttcctaatatgtactataagtgtattgggaacattttgcattc 72
Query: 61 atggttttgtatcaat 76
|| ||||||| |||||
Sbjct: 73 atagttttgtgtcaat 88
>RF00708;mir-450;ABRQ01123746.1/594-504 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 81.8 bits (41), Expect = 1e-15
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 1 actatttttgcgatgtgttcctaatatgcagtataaatatattgggagcattttgcatgc 60
|||||||||||||| ||||||||||||| ||||| |||||||||| ||||||||||
Sbjct: 13 actatttttgcgatatgttcctaatatgttatataagtatattgggaacattttgcatct 72
Query: 61 atggttttgtatcaata 77
|| ||||||||||||||
Sbjct: 73 atagttttgtatcaata 89
>RF00708;mir-450;AAQQ01708411.1/190-100 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 91
Score = 73.8 bits (37), Expect = 3e-13
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 1 actatttttgcgatgtgttcctaatatgcagtataaatatattgggagcattttgcatgc 60
|||||||||||||||||||||||||||| | || ||| |||||||| ||||||||||
Sbjct: 13 actatttttgcgatgtgttcctaatatgtaataagaatgtattgggaacattttgcattt 72
Query: 61 atggttttgtatcaata 77
| ||||||||||||||
Sbjct: 73 gtagttttgtatcaata 89
>RF00708;mir-450;ABRO01450845.1/1386-1298 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 89
Score = 73.8 bits (37), Expect = 3e-13
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 3 tatttttgcgatgtgttcctaatatgcagtataaatatattgggagcattttgcatgcat 62
||||||||||||||||| |||||||||| | | |||||| ||||| ||||| |||||| |
Sbjct: 14 tatttttgcgatgtgttactaatatgcactttgaatatactgggaacatttcgcatgc-t 72
Query: 63 ggttttgtatcaatata 79
||||||||||||||||
Sbjct: 73 tgttttgtatcaatata 89
>RF00708;mir-450;CAAA01222947.1/3684-3594 10090:Mus musculus
(house mouse)
Length = 91
Score = 67.9 bits (34), Expect = 2e-11
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 5 tttttgcgatgtgttcctaatatgcagtataaatatattgggagcattttgcat 58
|||||||||||||||||||||||| ||||| |||||||||| ||||||||||
Sbjct: 17 tttttgcgatgtgttcctaatatgtgctataattatattgggaacattttgcat 70
>RF00708;mir-450;AANN01800872.1/333-426 9365:Erinaceus europaeus
(western European hedgehog)
Length = 94
Score = 65.9 bits (33), Expect = 7e-11
Identities = 49/54 (90%), Gaps = 4/54 (7%)
Strand = Plus / Plus
Query: 12 gatgtgttcctaatatgcagt----ataaatatattgggagcattttgcatgca 61
||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 23 gatgtgttcctaatatgcagtttagataaatatattgggagcactttgcatgca 76
>RF00708;mir-450;AAYZ01306302.1/1453-1363 9978:Ochotona princeps
(American pika)
Length = 91
Score = 65.9 bits (33), Expect = 7e-11
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 1 actatttttgcgatgtgttcctaatatgcagtataaatatattgggagcattttgcatgc 60
|||||||||||||||||||||||||||| | | ||| | ||||||| || || |||| |
Sbjct: 13 actatttttgcgatgtgttcctaatatgtaatgtaactgtattggggacacttggcattc 72
Query: 61 atggttttgtatcaata 77
|| ||||||||||||||
Sbjct: 73 atagttttgtatcaata 89
>RF00708;mir-450;AAKN02053360.1/153106-153014 10141:Cavia
porcellus (domestic guinea pig)
Length = 93
Score = 63.9 bits (32), Expect = 3e-10
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 32 tataaatatattgggagcattttgcatgcatggttttgtatcaatata 79
||||| |||||||||| |||||||||| ||| ||||||||||||||||
Sbjct: 46 tataagtatattgggaacattttgcatccatagttttgtatcaatata 93
>RF00708;mir-450;BX649621.5/156260-156170 10090:Mus musculus
(house mouse)
Length = 91
Score = 60.0 bits (30), Expect = 4e-09
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 1 actatttttgcgatgtgttcctaatatgcagtataaatatattggg 46
|||||||||||||||||||||||||||| | ||| | |||||||||
Sbjct: 13 actatttttgcgatgtgttcctaatatgtactatgagtatattggg 58
>RF00708;mir-450;ABRO01450845.1/1546-1456 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 1 actatttttgcgatgtgttcctaatatgcagtataaatatattgggagcattttgcatgc 60
|||||||||||||||||||| ||||||| ||| ||| ||||||| ||| |||||| |
Sbjct: 13 actatttttgcgatgtgttcataatatgttatatgaatgtattggggacatcttgcattc 72
Query: 61 atggttttgtatcaata 77
|| |||| |||||||||
Sbjct: 73 atagtttcgtatcaata 89
>RF00708;mir-450;CAAA01222947.1/3522-3431 10090:Mus musculus
(house mouse)
Length = 92
Score = 56.0 bits (28), Expect = 7e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 40 tattgggagcattttgcatgcatggttttgtatcaatata 79
|||||||| |||||||||||||| |||||||||||||||
Sbjct: 53 tattgggaacattttgcatgcataattttgtatcaatata 92
>RF00708;mir-450;AAGU02249219.1/617-526 9785:Loxodonta africana
(African savanna elephant)
Length = 92
Score = 56.0 bits (28), Expect = 7e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 40 tattgggagcattttgcatgcatggttttgtatcaatata 79
||||||||||||||||||| ||| |||||||||| |||||
Sbjct: 53 tattgggagcattttgcatccatagttttgtatcgatata 92
>RF00708;mir-450;AABR04140564.1/3502-3412 10116:Rattus norvegicus
(Norway rat)
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 5 tttttgcgatgtgttcctaatatgcagtataaatatattgggagcattttgcat 58
||||||||||||||||||||| || || || |||||||||| ||||||||||
Sbjct: 17 tttttgcgatgtgttcctaatgtgtgctacaattatattgggaacattttgcat 70
