miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01059;mir-598;ABAV01003166.1/37535-37439 45351:Nematostella
vectensis (starlet sea anemone)
Length = 97
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 81 tcatcaccatcatcgtcatcatcgtcgtc 109
||||||||||||||||||||||| |||||
Sbjct: 65 tcatcaccatcatcgtcatcatcatcgtc 93
>RF01059;mir-598;ACCP01000230.1/53511-53414 564608:Micromonas
pusilla CCMP1545
Length = 98
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 81 tcatcaccatcatcgtcatcatcgtcgtcgtc 112
|||||| ||||||| |||||||||||||||||
Sbjct: 44 tcatcatcatcatcatcatcatcgtcgtcgtc 75
>RF01059;mir-598;AASC02058861.1/4716-4811 6500:Aplysia californica
(California sea hare)
Length = 96
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 81 tcatcaccatcatcgtcatcatcgtcgtcgtc 112
|||||| ||||||| |||||||||||||||||
Sbjct: 36 tcatcatcatcatcatcatcatcgtcgtcgtc 5
>RF01059;mir-598;AASC02021307.1/18668-18573 6500:Aplysia californica
(California sea hare)
Length = 96
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 81 tcatcaccatcatcgtcatcatcgtcgtcgtc 112
|||||| ||||||||||||||||||| |||||
Sbjct: 49 tcatcatcatcatcgtcatcatcgtcatcgtc 80
>RF01059;mir-598;AABR04154735.1/655-538 10116:Rattus norvegicus
(Norway rat)
Length = 118
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 81 tcatcaccatcatcgtcatcatcgtcgtcgtc 112
|||||| ||||||| |||||||||||||||||
Sbjct: 47 tcatcatcatcatcatcatcatcgtcgtcgtc 78
>RF01059;mir-598;AF004386.1/577-669 399104:Helobdella sp. MS-2000
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 84 tcaccatcatcgtcatcatcgtc 106
|||||||||||||||||||||||
Sbjct: 27 tcaccatcatcgtcatcatcgtc 5
>RF01059;mir-598;ABIM01013566.1/12490-12619 3649:Carica papaya
(papaya)
Length = 130
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 83 atcaccatcatcgtcatcatcgtcgtcgtc 112
|||||||||||||||||| || ||||||||
Sbjct: 37 atcaccatcatcgtcatcttcatcgtcgtc 8
>RF01059;mir-598;AAGJ02002026.1/222-133 7668:Strongylocentrotus
purpuratus
Length = 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 81 tcatcaccatcatcgtcatcatcgtc 106
|||||||||||||| |||||||||||
Sbjct: 30 tcatcaccatcatcatcatcatcgtc 5
>RF01059;mir-598;AAGJ02026630.1/5974-5881 7668:Strongylocentrotus
purpuratus
Length = 94
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 81 tcatcaccatcatcgtcatcatcgtc 106
|||||||||||||| |||||||||||
Sbjct: 45 tcatcaccatcatcatcatcatcgtc 20
>RF01059;mir-598;AAEX02009934.1/18003-18071 9615:Canis lupus
familiaris (dog)
Length = 69
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 81 tcatcaccatcatcgtcatcatcgtc 106
|||||| |||||||||||||||||||
Sbjct: 39 tcatcatcatcatcgtcatcatcgtc 14
>RF01059;mir-598;AAHY01124327.1/2124-2030 10090:Mus musculus (house
mouse)
Length = 95
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 81 tcatcaccatcatcgtcatcatcgtc 106
|||||| |||||||||||||||||||
Sbjct: 60 tcatcatcatcatcgtcatcatcgtc 85
>RF01059;mir-598;AAWZ01029771.1/63072-63013 28377:Anolis
carolinensis (green anole)
Length = 60
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 83 atcaccatcatcgtcatcatcgtcgtcgtc 112
|||| ||||||| |||||||||||||||||
Sbjct: 34 atcatcatcatcatcatcatcgtcgtcgtc 5
>RF01059;mir-598;AAQB01006160.1/2820-2729 7260:Drosophila willistoni
Length = 92
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 79 cttcatcaccatcatcgtcatcatcgtcgtcgtc 112
|||||| | ||||||| |||||||||||||||||
Sbjct: 38 cttcatgatcatcatcatcatcatcgtcgtcgtc 5
