miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00248;mir-148;ABRQ01001566.1/8621-8537 9813:Procavia capensis
(cape rock hyrax)
Length = 85
Score = 133 bits (67), Expect = 3e-31
Identities = 70/71 (98%)
Strand = Plus / Minus
Query: 1 cgggcccaagttctgtcatgcactgactgctccagagcccgagtcggagtgtatcacaga 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 78 cgggcccaagttctgtcatgcactgactgctccagagcccgagtctgagtgtatcacaga 19
Query: 61 acctgggccgg 71
|||||||||||
Sbjct: 18 acctgggccgg 8
>RF00248;mir-148;AAFR03029848.1/1033-1118 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 86
Score = 111 bits (56), Expect = 1e-24
Identities = 65/68 (95%)
Strand = Plus / Minus
Query: 4 gcccaagttctgtcatgcactgactgctccagagcccgagtcggagtgtatcacagaacc 63
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 75 gcccaagttctgtcatgcactgactgctccagagtctaagtcggagtgtatcacagaacc 16
Query: 64 tgggccgg 71
||||||||
Sbjct: 15 tgggccgg 8
>RF00248;mir-148;CR450718.10/98432-98517 7955:Danio rerio
(zebrafish)
Length = 86
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 cgggcccaagttctgtcatgcactgact 28
|||||| |||||||||||||||||||||
Sbjct: 78 cgggccaaagttctgtcatgcactgact 51
>RF00248;mir-148;CU104777.4/16075-15990 7955:Danio rerio
(zebrafish)
Length = 86
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 41 gagtcggagtgtatcacagaac 62
||||||||||||||||||||||
Sbjct: 39 gagtcggagtgtatcacagaac 18
