miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00653;mir-22;AAGU02129422.1/1672-1588 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 161 bits (81), Expect = 2e-39
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 1 cagagggcaacagttcttcaactggcagctttagctgggtcaggacataaagcttgccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 cagagggcaacagttcttcaactggcagctttagctgggtcaggacataaagcttgccac 24
Query: 61 tgaagaactactgcggctcag 81
|||||||||||||||||||||
Sbjct: 23 tgaagaactactgcggctcag 3
>RF00653;mir-22;AAFR03054554.1/22241-22157 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 97.6 bits (49), Expect = 2e-20
Identities = 64/69 (92%)
Strand = Plus / Minus
Query: 11 cagttcttcaactggcagctttagctgggtcaggacataaagcttgccactgaagaacta 70
||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct: 73 cagttcttcaactggcagctttagctgggacaagacataaagctcgccactgaagaactg 14
Query: 71 ctgcggctc 79
||| |||||
Sbjct: 13 ctgtggctc 5
>RF00653;mir-22;CR353219.1/89-176 9031:Gallus gallus (chicken)
Length = 88
Score = 71.9 bits (36), Expect = 1e-12
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Minus
Query: 8 caacagttcttcaactggcagctttagctg---ggtcaggacataaagcttgccactgaa 64
||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 79 caacagttcttcaactggcagctttagctactagagaaggacataaagcttgccactgaa 20
Query: 65 gaactactgc 74
||||| ||||
Sbjct: 19 gaactgctgc 10
>RF00653;mir-22;BAAF04035139.1/3478-3391 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 61.9 bits (31), Expect = 1e-09
Identities = 57/65 (87%), Gaps = 3/65 (4%)
Strand = Plus / Minus
Query: 8 caacagttcttcaactggcagctttagctgggtc---aggacataaagcttgccactgaa 64
||||||||||||| ||||||||||||||||| | || ||||||||||||||| ||||
Sbjct: 79 caacagttcttcagctggcagctttagctggtgcacgagaacataaagcttgccagtgaa 20
Query: 65 gaact 69
|||||
Sbjct: 19 gaact 15
>RF00653;mir-22;CAAE01014999.1/1459406-1459318 99883:Tetraodon
nigroviridis
Length = 89
Score = 56.0 bits (28), Expect = 7e-08
Identities = 61/70 (87%), Gaps = 4/70 (5%)
Strand = Plus / Minus
Query: 8 caacagttcttcaactggcagctttagc--tgggtc--aggacataaagcttgccactga 63
|||||| ||||||||||||||||||||| ||||| ||||||||||||| |||| |||
Sbjct: 80 caacagctcttcaactggcagctttagcgtggggtcggaggacataaagctagccagtga 21
Query: 64 agaactactg 73
||||| ||||
Sbjct: 20 agaacgactg 11
>RF00653;mir-22;CU442763.9/20980-21067 7955:Danio rerio
(zebrafish)
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 8 caacagttcttcaactggcagctttagc 35
||||||||||||| ||||||||||||||
Sbjct: 79 caacagttcttcagctggcagctttagc 52
>RF00653;mir-22;AAWZ01029001.1/2472-2561 28377:Anolis carolinensis
(green anole)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Minus
Query: 8 caacagttcttcaactg-gcagctttagct 36
||||||||||||||||| ||||||||||||
Sbjct: 81 caacagttcttcaactgcgcagctttagct 52
>RF00653;mir-22;CT030218.5/50207-50290 7955:Danio rerio
(zebrafish)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 8 caacagttcttcaactggcagcttta 33
|||||| |||||||||||||||||||
Sbjct: 75 caacagctcttcaactggcagcttta 50
>RF00653;mir-22;BAAF04020956.1/20-107 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 8 caacagttcttcaactggcagcttta 33
|||||| |||||||||||||||||||
Sbjct: 79 caacagctcttcaactggcagcttta 54
