miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00144;mir-199;AAWR02017790.1/21207-21308 9796:Equus caballus
(horse)
Length = 102
Score = 131 bits (66), Expect = 1e-30
Identities = 69/70 (98%)
Strand = Plus / Minus
Query: 1 cccagcctaaccaatgtgcagactactgtacacattcagagccccctgaacaggtagtct 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 90 cccagcctaaccaatgtgcagactactgtacacattcggagccccctgaacaggtagtct 31
Query: 61 gaacactggg 70
||||||||||
Sbjct: 30 gaacactggg 21
>RF00144;mir-199;AANU01122656.1/5080-5181 9544:Macaca mulatta
(rhesus monkey)
Length = 102
Score = 127 bits (64), Expect = 2e-29
Identities = 73/76 (96%)
Strand = Plus / Minus
Query: 1 cccagcctaaccaatgtgcagactactgtacacattcagagccccctgaacaggtagtct 60
||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||
Sbjct: 90 cccagcctaaccaatgtgcagactactgtacacgttgagagcctcctgaacaggtagtct 31
Query: 61 gaacactgggttggcg 76
||||||||||||||||
Sbjct: 30 gaacactgggttggcg 15
>RF00144;mir-199;ABRQ01040059.1/381-480 9813:Procavia capensis
(cape rock hyrax)
Length = 100
Score = 123 bits (62), Expect = 3e-28
Identities = 72/74 (97%), Gaps = 1/74 (1%)
Strand = Plus / Minus
Query: 5 gcctaaccaatgtgcagactactgtacacattcagagccccctgaacaggtagtctgaac 64
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 85 gcctaaccaatgtgcagactactgtacacattcaga-acccctgaacaggtagtctgaac 27
Query: 65 actgggttggcggg 78
||||||||||||||
Sbjct: 26 actgggttggcggg 13
>RF00144;mir-199;AAQQ01144563.1/4013-4113 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 101
Score = 115 bits (58), Expect = 8e-26
Identities = 74/78 (94%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 1 cccagcctaaccaatgtgcagactactgtacacattcagagccccctgaacaggtagtct 60
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 89 cccagcctaaccaatgtgcagactactgtacacattcagagcctcctgaaca-ctagtct 31
Query: 61 gaacactgggttggcggg 78
|||||||||| |||||||
Sbjct: 30 gaacactgggatggcggg 13
>RF00144;mir-199;AAKN02056464.1/56518-56417 10141:Cavia porcellus
(domestic guinea pig)
Length = 102
Score = 115 bits (58), Expect = 8e-26
Identities = 67/70 (95%)
Strand = Plus / Minus
Query: 1 cccagcctaaccaatgtgcagactactgtacacattcagagccccctgaacaggtagtct 60
||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||
Sbjct: 90 cccagcctaaccaatgtgcagactactgtacacatgcagaggcgcctgaacaggtagtct 31
Query: 61 gaacactggg 70
||||||||||
Sbjct: 30 gaacactggg 21
>RF00144;mir-199;ABRO01249229.1/2824-2923 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 103 bits (52), Expect = 3e-22
Identities = 71/76 (93%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 1 cccagcctaaccaatgtgcagactactgtacacattcagagccccctgaacaggtagtct 60
||||||||||||| |||||||||||||||||||| ||| |||| ||||||||||||||||
Sbjct: 89 cccagcctaaccagtgtgcagactactgtacaca-tcacagccgcctgaacaggtagtct 31
Query: 61 gaacactgggttggcg 76
|||||||||| |||||
Sbjct: 30 gaacactgggatggcg 15
>RF00144;mir-199;ABDC01156515.1/926-825 30608:Microcebus murinus
(gray mouse lemur)
Length = 102
Score = 91.7 bits (46), Expect = 1e-18
Identities = 64/70 (91%)
Strand = Plus / Minus
Query: 1 cccagcctaaccaatgtgcagactactgtacacattcagagccccctgaacaggtagtct 60
||||||||||||||||||||||||||||||| | | ||| ||||||||||||||||||
Sbjct: 90 cccagcctaaccaatgtgcagactactgtacgcgtgcagcagcccctgaacaggtagtct 31
Query: 61 gaacactggg 70
||||||||||
Sbjct: 30 gaacactggg 21
>RF00144;mir-199;AAHY01076446.1/77391-77291 10090:Mus musculus
(house mouse)
Length = 101
Score = 91.7 bits (46), Expect = 1e-18
Identities = 71/78 (91%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 1 cccagcctaaccaatgtgcagactactgtacacattcagagccccctgaacaggtagtct 60
|||||||||||||||||||||||||||||||| || |||| ||||||||||||||||
Sbjct: 89 cccagcctaaccaatgtgcagactactgtaca-tgtcccagcctcctgaacaggtagtct 31
Query: 61 gaacactgggttggcggg 78
|||||||||| |||||||
Sbjct: 30 gaacactgggatggcggg 13
>RF00144;mir-199;AAWZ01010560.1/117412-117513 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 83.8 bits (42), Expect = 3e-16
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 1 cccagcctaaccaatgtgcagactactgtacacattcagagccccctgaacaggtagtct 60
||||| ||||||||||||||||||||||||||| || ||| ||||||||||||||||
Sbjct: 90 cccagtctaaccaatgtgcagactactgtacacctttgtagcttcctgaacaggtagtct 31
Query: 61 gaacactggg 70
||||||||||
Sbjct: 30 gaacactggg 21
>RF00144;mir-199;AAFR03049221.1/24866-24967 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 75.8 bits (38), Expect = 7e-14
Identities = 62/70 (88%)
Strand = Plus / Minus
Query: 1 cccagcctaaccaatgtgcagactactgtacacattcagagccccctgaacaggtagtct 60
||||||||||||||||||||||||||||||||| || | | |||| |||||||||||
Sbjct: 90 cccagcctaaccaatgtgcagactactgtacacctttgcaatctcctggacaggtagtct 31
Query: 61 gaacactggg 70
||||||||||
Sbjct: 30 gaacactggg 21
>RF00144;mir-199;AAHX01020762.1/285-187 10116:Rattus norvegicus
(Norway rat)
Length = 99
Score = 71.9 bits (36), Expect = 1e-12
Identities = 63/71 (88%), Gaps = 2/71 (2%)
Strand = Plus / Minus
Query: 1 cccagcctaaccaatgtgcagactactgtacacattcagagccccctgaacaggtagtct 60
|||||||||||||||||||||||||||||||| || ||| ||||||||||||||||
Sbjct: 87 cccagcctaaccaatgtgcagactactgtacaatttgggag--tcctgaacaggtagtct 30
Query: 61 gaacactgggt 71
||||||||||
Sbjct: 29 aaacactgggt 19
>RF00144;mir-199;AADN02026635.1/12137-12039 9031:Gallus gallus
(chicken)
Length = 99
Score = 65.9 bits (33), Expect = 7e-11
Identities = 60/68 (88%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 3 cagcctaaccaatgtgcagactactgtacacattcagagccccctgaacaggtagtctga 62
|||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct: 85 cagcctaaccaatgtgcagactactgtacaatctcgtag--tcctgaacaggtagtctga 28
Query: 63 acactggg 70
||||||||
Sbjct: 27 acactggg 20
>RF00144;mir-199;CAAK05055714.1/3303-3204 7955:Danio rerio
(zebrafish)
Length = 100
Score = 65.9 bits (33), Expect = 7e-11
Identities = 60/68 (88%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 3 cagcctaaccaatgtgcagactactgtacacattcagagccccctgaacaggtagtctga 62
||||||||||||||||||||||||||| ||| || | |||||||||||||||||||
Sbjct: 86 cagcctaaccaatgtgcagactactgt--acaatctctacgccctgaacaggtagtctga 29
Query: 63 acactggg 70
||||||||
Sbjct: 28 acactggg 21
>RF00144;mir-199;ABRQ01043924.1/1531-1628 9813:Procavia capensis
(cape rock hyrax)
Length = 98
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 1 cccagcctaaccaatgtgcagactactgtaca 32
||||||||||||||||||||||||||||||||
Sbjct: 87 cccagcctaaccaatgtgcagactactgtaca 56
>RF00144;mir-199;CU138550.14/80968-81064 7955:Danio rerio
(zebrafish)
Length = 97
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 2 ccagcctaaccaatgtgcagactactgtaca 32
|||||||||||||||||||||||||||||||
Sbjct: 86 ccagcctaaccaatgtgcagactactgtaca 56
>RF00144;mir-199;ABPJ01035359.1/311-410 35575:Mchenga conophoros
Length = 100
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 2 ccagcctaaccaatgtgcagactactgtaca 32
|||||||||||||||||||||||||||||||
Sbjct: 87 ccagcctaaccaatgtgcagactactgtaca 57
>RF00144;mir-199;AANH01004681.1/136443-136347 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 97
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 2 ccagcctaaccaatgtgcagactactgtaca 32
|||||||||||||||||||||||||||||||
Sbjct: 86 ccagcctaaccaatgtgcagactactgtaca 56
>RF00144;mir-199;BAAE01013242.1/84-183 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 2 ccagcctaaccaatgtgcagactactgtaca 32
|||||||||||||||||||||||||||||||
Sbjct: 87 ccagcctaaccaatgtgcagactactgtaca 57
>RF00144;mir-199;CAAB01000803.1/18144-18243 31033:Takifugu
rubripes
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 1 cccagcctaaccaatgtgcagactactgtacac 33
||||| |||||||||||||||||||||||||||
Sbjct: 88 cccagtctaaccaatgtgcagactactgtacac 56
>RF00144;mir-199;AANH01005434.1/24491-24590 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 1 cccagcctaaccaatgtgcagactactgtacac 33
||||| |||||||||||||||||||||||||||
Sbjct: 88 cccagtctaaccaatgtgcagactactgtacac 56
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 47 tgaacaggtagtctgaacactgggt 71
|||||||||||||||||||||||||
Sbjct: 44 tgaacaggtagtctgaacactgggt 20
>RF00144;mir-199;AANH01004317.1/876-975 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 1 cccagcctaaccaatgtgcagactactgt 29
|||||||||||||||||||||||||||||
Sbjct: 88 cccagcctaaccaatgtgcagactactgt 60
>RF00144;mir-199;BAAF04061048.1/5562-5661 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 1 cccagcctaaccaatgtgcagactactgtacac 33
||||| |||||||||||||||||||||||||||
Sbjct: 88 cccagtctaaccaatgtgcagactactgtacac 56
>RF00144;mir-199;AAHX01053598.1/14659-14563 10116:Rattus
norvegicus (Norway rat)
Length = 97
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 1 cccagcctaaccaatgtgcagactactgtaca 32
||||||||||||||||||| ||||||||||||
Sbjct: 85 cccagcctaaccaatgtgctgactactgtaca 54
>RF00144;mir-199;ABQF01040854.1/79152-79251 59729:Taeniopygia
guttata
Length = 100
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 1 cccagcctaaccaatgtgcagactactgtaca 32
||||| ||||||||||||||||||||||||||
Sbjct: 88 cccagtctaaccaatgtgcagactactgtaca 57
>RF00144;mir-199;ABPJ01052317.1/532-631 35575:Mchenga conophoros
Length = 100
Score = 56.0 bits (28), Expect = 7e-08
Identities = 58/67 (86%), Gaps = 2/67 (2%)
Strand = Plus / Minus
Query: 4 agcctaaccaatgtgcagactactgtacacattcagagccccctgaacaggtagtctgaa 63
|||||||||||||||||||||||||| || | | |||| |||||||||||||||||
Sbjct: 85 agcctaaccaatgtgcagactactgttcagctgc--agcctgatgaacaggtagtctgaa 28
Query: 64 cactggg 70
|||||||
Sbjct: 27 cactggg 21
>RF00144;mir-199;CT563248.9/85109-85010 7955:Danio rerio
(zebrafish)
Length = 100
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 7 ctaaccaatgtgcagactactgtacac 33
|||||||||||||||||||||||||||
Sbjct: 82 ctaaccaatgtgcagactactgtacac 56
>RF00144;mir-199;CAAB01001079.1/26340-26439 31033:Takifugu
rubripes
Length = 100
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 7 ctaaccaatgtgcagactactgtacac 33
|||||||||||||||||||||||||||
Sbjct: 82 ctaaccaatgtgcagactactgtacac 56
>RF00144;mir-199;BAAF04076833.1/4729-4828 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 7 ctaaccaatgtgcagactactgtacac 33
|||||||||||||||||||||||||||
Sbjct: 82 ctaaccaatgtgcagactactgtacac 56
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 46 ctgaacaggtagtctgaacactggg 70
|||||||||||||||||||||||||
Sbjct: 45 ctgaacaggtagtctgaacactggg 21
>RF00144;mir-199;BAAE01184372.1/319-221 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 4 agcctaaccaatgtgcagactactgt 29
||||||||||||||||||||||||||
Sbjct: 85 agcctaaccaatgtgcagactactgt 60
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 48 gaacaggtagtctgaacactggg 70
|||||||||||||||||||||||
Sbjct: 43 gaacaggtagtctgaacactggg 21
>RF00144;mir-199;AAVX01256932.1/291-390 7868:Callorhinchus milii
(ghost shark)
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 45 cctgaacaggtagtctgaacactggg 70
||||||||||||||||||||||||||
Sbjct: 46 cctgaacaggtagtctgaacactggg 21
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 7 ctaaccaatgtgcagactactgtaca 32
||||||||||||||||||||||||||
Sbjct: 82 ctaaccaatgtgcagactactgtaca 57
>RF00144;mir-199;BX088529.6/78678-78580 7955:Danio rerio
(zebrafish)
Length = 99
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1 cccagcctaaccaatgtgcagactactgt 29
||||||||||||||||||| |||||||||
Sbjct: 87 cccagcctaaccaatgtgcggactactgt 59
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 47 tgaacaggtagtctgaacactggg 70
||||||||||||||||||||||||
Sbjct: 43 tgaacaggtagtctgaacactggg 20
>RF00144;mir-199;CAAB01000177.1/183726-183824 31033:Takifugu
rubripes
Length = 99
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1 cccagcctaaccaatgtgcagactactgt 29
|||||| ||||||||||||||||||||||
Sbjct: 88 cccagcttaaccaatgtgcagactactgt 60
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 47 tgaacaggtagtctgaacactggg 70
||||||||||||||||||||||||
Sbjct: 44 tgaacaggtagtctgaacactggg 21
>RF00144;mir-199;ABRT010369364.1/546-644 9478:Tarsius syrichta
(Philippine tarsier)
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 49 aacaggtagtctgaacactggg 70
||||||||||||||||||||||
Sbjct: 41 aacaggtagtctgaacactggg 20
