miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00144;mir-199;ABRQ01043924.1/1531-1628 9813:Procavia capensis
(cape rock hyrax)
Length = 98
Score = 145 bits (73), Expect = 8e-35
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 1 cagcctaaccaatgtgcagactactgtacaatttgggagtcctgaacagatagtctaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 cagcctaaccaatgtgcagactactgtacaatttgggagtcctgaacagatagtctaaac 26
Query: 61 actgggtagacgg 73
|||||||||||||
Sbjct: 25 actgggtagacgg 13
>RF00144;mir-199;AAHX01020762.1/285-187 10116:Rattus norvegicus
(Norway rat)
Length = 99
Score = 137 bits (69), Expect = 2e-32
Identities = 72/73 (98%)
Strand = Plus / Minus
Query: 1 cagcctaaccaatgtgcagactactgtacaatttgggagtcctgaacagatagtctaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 85 cagcctaaccaatgtgcagactactgtacaatttgggagtcctgaacaggtagtctaaac 26
Query: 61 actgggtagacgg 73
|||||||||||||
Sbjct: 25 actgggtagacgg 13
>RF00144;mir-199;AADN02026635.1/12137-12039 9031:Gallus gallus
(chicken)
Length = 99
Score = 97.6 bits (49), Expect = 2e-20
Identities = 67/73 (91%)
Strand = Plus / Minus
Query: 1 cagcctaaccaatgtgcagactactgtacaatttgggagtcctgaacagatagtctaaac 60
|||||||||||||||||||||||||||||||| | | |||||||||||| |||||| |||
Sbjct: 85 cagcctaaccaatgtgcagactactgtacaatctcgtagtcctgaacaggtagtctgaac 26
Query: 61 actgggtagacgg 73
|||||| ||||||
Sbjct: 25 actgggcagacgg 13
>RF00144;mir-199;AANU01122656.1/5080-5181 9544:Macaca mulatta
(rhesus monkey)
Length = 102
Score = 75.8 bits (38), Expect = 7e-14
Identities = 62/69 (89%), Gaps = 2/69 (2%)
Strand = Plus / Minus
Query: 1 cagcctaaccaatgtgcagactactgtacaatttgggag--tcctgaacagatagtctaa 58
|||||||||||||||||||||||||||||| ||| ||| |||||||||| |||||| |
Sbjct: 88 cagcctaaccaatgtgcagactactgtacacgttgagagcctcctgaacaggtagtctga 29
Query: 59 acactgggt 67
|||||||||
Sbjct: 28 acactgggt 20
>RF00144;mir-199;CAAK05055714.1/3303-3204 7955:Danio rerio
(zebrafish)
Length = 100
Score = 67.9 bits (34), Expect = 2e-11
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 1 cagcctaaccaatgtgcagactactgtacaatttgggagtcctgaacagatagtctaaac 60
|||||||||||||||||||||||||||||||| | | ||||||||| |||||| |||
Sbjct: 86 cagcctaaccaatgtgcagactactgtacaatctctacgccctgaacaggtagtctgaac 27
Query: 61 actggg 66
||||||
Sbjct: 26 actggg 21
>RF00144;mir-199;AAWR02017790.1/21207-21308 9796:Equus caballus
(horse)
Length = 102
Score = 65.9 bits (33), Expect = 6e-11
Identities = 60/68 (88%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 1 cagcctaaccaatgtgcagactactgtacaatttgggag--tcctgaacagatagtctaa 58
|||||||||||||||||||||||||||||| || |||| ||||||||| |||||| |
Sbjct: 88 cagcctaaccaatgtgcagactactgtacacattcggagccccctgaacaggtagtctga 29
Query: 59 acactggg 66
||||||||
Sbjct: 28 acactggg 21
>RF00144;mir-199;CU138550.14/80968-81064 7955:Danio rerio
(zebrafish)
Length = 97
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1 cagcctaaccaatgtgcagactactgtacaa 31
|||||||||||||||||||||||||||||||
Sbjct: 85 cagcctaaccaatgtgcagactactgtacaa 55
>RF00144;mir-199;ABPJ01035359.1/311-410 35575:Mchenga conophoros
Length = 100
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1 cagcctaaccaatgtgcagactactgtacaa 31
|||||||||||||||||||||||||||||||
Sbjct: 86 cagcctaaccaatgtgcagactactgtacaa 56
>RF00144;mir-199;AANH01004681.1/136443-136347 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 97
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1 cagcctaaccaatgtgcagactactgtacaa 31
|||||||||||||||||||||||||||||||
Sbjct: 85 cagcctaaccaatgtgcagactactgtacaa 55
>RF00144;mir-199;BAAE01013242.1/84-183 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1 cagcctaaccaatgtgcagactactgtacaa 31
|||||||||||||||||||||||||||||||
Sbjct: 86 cagcctaaccaatgtgcagactactgtacaa 56
>RF00144;mir-199;AAFR03049221.1/24866-24967 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 1 cagcctaaccaatgtgcagactactgtaca 30
||||||||||||||||||||||||||||||
Sbjct: 88 cagcctaaccaatgtgcagactactgtaca 59
>RF00144;mir-199;AAQQ01144563.1/4013-4113 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 101
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 1 cagcctaaccaatgtgcagactactgtaca 30
||||||||||||||||||||||||||||||
Sbjct: 87 cagcctaaccaatgtgcagactactgtaca 58
>RF00144;mir-199;AAHY01076446.1/77391-77291 10090:Mus musculus
(house mouse)
Length = 101
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 1 cagcctaaccaatgtgcagactactgtaca 30
||||||||||||||||||||||||||||||
Sbjct: 87 cagcctaaccaatgtgcagactactgtaca 58
>RF00144;mir-199;AAKN02056464.1/56518-56417 10141:Cavia porcellus
(domestic guinea pig)
Length = 102
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 1 cagcctaaccaatgtgcagactactgtaca 30
||||||||||||||||||||||||||||||
Sbjct: 88 cagcctaaccaatgtgcagactactgtaca 59
>RF00144;mir-199;ABRQ01040059.1/381-480 9813:Procavia capensis
(cape rock hyrax)
Length = 100
Score = 60.0 bits (30), Expect = 4e-09
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 3 gcctaaccaatgtgcagactactgtaca-atttgggagtcctgaacagatagtctaaaca 61
|||||||||||||||||||||||||||| ||| | | ||||||||| |||||| ||||
Sbjct: 85 gcctaaccaatgtgcagactactgtacacattcagaacccctgaacaggtagtctgaaca 26
Query: 62 ctgggt 67
||||||
Sbjct: 25 ctgggt 20
>RF00144;mir-199;ABDC01156515.1/926-825 30608:Microcebus murinus
(gray mouse lemur)
Length = 102
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 1 cagcctaaccaatgtgcagactactgtac 29
|||||||||||||||||||||||||||||
Sbjct: 88 cagcctaaccaatgtgcagactactgtac 60
>RF00144;mir-199;AAWZ01010560.1/117412-117513 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/64 (87%), Gaps = 2/64 (3%)
Strand = Plus / Minus
Query: 5 ctaaccaatgtgcagactactgtacaatttgggag--tcctgaacagatagtctaaacac 62
|||||||||||||||||||||||||| || | || |||||||||| |||||| |||||
Sbjct: 84 ctaaccaatgtgcagactactgtacacctttgtagcttcctgaacaggtagtctgaacac 25
Query: 63 tggg 66
||||
Sbjct: 24 tggg 21
>RF00144;mir-199;ABQF01040854.1/79152-79251 59729:Taeniopygia
guttata
Length = 100
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 5 ctaaccaatgtgcagactactgtacaa 31
|||||||||||||||||||||||||||
Sbjct: 82 ctaaccaatgtgcagactactgtacaa 56
>RF00144;mir-199;AANH01004317.1/876-975 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 1 cagcctaaccaatgtgcagactactgt 27
|||||||||||||||||||||||||||
Sbjct: 86 cagcctaaccaatgtgcagactactgt 60
>RF00144;mir-199;AAVX01256932.1/291-390 7868:Callorhinchus milii
(ghost shark)
Length = 100
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 5 ctaaccaatgtgcagactactgtacaa 31
|||||||||||||||||||||||||||
Sbjct: 82 ctaaccaatgtgcagactactgtacaa 56
>RF00144;mir-199;AAHX01053598.1/14659-14563 10116:Rattus
norvegicus (Norway rat)
Length = 97
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 1 cagcctaaccaatgtgcagactactgtaca 30
||||||||||||||||| ||||||||||||
Sbjct: 83 cagcctaaccaatgtgctgactactgtaca 54
>RF00144;mir-199;ABRO01249229.1/2824-2923 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 1 cagcctaaccaatgtgcagactactgtaca 30
||||||||||| ||||||||||||||||||
Sbjct: 87 cagcctaaccagtgtgcagactactgtaca 58
>RF00144;mir-199;CT563248.9/85109-85010 7955:Danio rerio
(zebrafish)
Length = 100
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 5 ctaaccaatgtgcagactactgtaca 30
||||||||||||||||||||||||||
Sbjct: 82 ctaaccaatgtgcagactactgtaca 57
>RF00144;mir-199;CAAB01000803.1/18144-18243 31033:Takifugu
rubripes
Length = 100
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 5 ctaaccaatgtgcagactactgtaca 30
||||||||||||||||||||||||||
Sbjct: 82 ctaaccaatgtgcagactactgtaca 57
>RF00144;mir-199;CAAB01001079.1/26340-26439 31033:Takifugu
rubripes
Length = 100
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 5 ctaaccaatgtgcagactactgtaca 30
||||||||||||||||||||||||||
Sbjct: 82 ctaaccaatgtgcagactactgtaca 57
>RF00144;mir-199;ABPJ01052317.1/532-631 35575:Mchenga conophoros
Length = 100
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 2 agcctaaccaatgtgcagactactgt 27
||||||||||||||||||||||||||
Sbjct: 85 agcctaaccaatgtgcagactactgt 60
>RF00144;mir-199;AANH01005434.1/24491-24590 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 5 ctaaccaatgtgcagactactgtaca 30
||||||||||||||||||||||||||
Sbjct: 82 ctaaccaatgtgcagactactgtaca 57
>RF00144;mir-199;BAAF04061048.1/5562-5661 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 5 ctaaccaatgtgcagactactgtaca 30
||||||||||||||||||||||||||
Sbjct: 82 ctaaccaatgtgcagactactgtaca 57
>RF00144;mir-199;BAAE01184372.1/319-221 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 2 agcctaaccaatgtgcagactactgt 27
||||||||||||||||||||||||||
Sbjct: 85 agcctaaccaatgtgcagactactgt 60
>RF00144;mir-199;BAAF04076833.1/4729-4828 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 5 ctaaccaatgtgcagactactgtaca 30
||||||||||||||||||||||||||
Sbjct: 82 ctaaccaatgtgcagactactgtaca 57
>RF00144;mir-199;BX088529.6/78678-78580 7955:Danio rerio
(zebrafish)
Length = 99
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 cagcctaaccaatgtgcagactactgt 27
||||||||||||||||| |||||||||
Sbjct: 85 cagcctaaccaatgtgcggactactgt 59
>RF00144;mir-199;CAAB01000177.1/183726-183824 31033:Takifugu
rubripes
Length = 99
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 cagcctaaccaatgtgcagactactgt 27
|||| ||||||||||||||||||||||
Sbjct: 86 cagcttaaccaatgtgcagactactgt 60
