miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054377.1/1437-1516 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 129 bits (65), Expect = 8e-30
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 15 acttgaagataggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttc 74
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 4 acttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacggttc 63
Query: 75 acctattttttagtacc 91
|||||||||| ||||||
Sbjct: 64 acctatttttcagtacc 80
>RF00641;mir-154;ABRT010163757.1/310-389 9478:Tarsius syrichta
(Philippine tarsier)
Length = 80
Score = 69.9 bits (35), Expect = 6e-12
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 15 acttgaagataggttatccgtgtagccttcgctttacttgtgacgaatcatacac 69
||||||||||||||||||||||| |||||| || | ||||||||||||||||||
Sbjct: 4 acttgaagataggttatccgtgttgccttcaattgatttgtgacgaatcatacac 58
>RF00641;mir-154;ACBE01216515.1/5359-5280 9685:Felis catus
(domestic cat)
Length = 80
Score = 63.9 bits (32), Expect = 4e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 24 taggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttcacctatttt 83
|||||||||||||| |||||| || | |||||||| ||||||||| |||||||||||||
Sbjct: 13 taggttatccgtgttgccttcactcgatttgtgacgcatcatacaccgttcacctatttt 72
>RF00641;mir-154;AAPE01468961.1/2426-2505 59463:Myotis lucifugus
(little brown bat)
Length = 80
Score = 46.1 bits (23), Expect = 9e-05
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 21 agataggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttcacctat 80
|||| |||||||||||| |||||| ||||| |||| | |||| | || ||||||||||
Sbjct: 10 agatgggttatccgtgttgccttcactttatttgtccccaatcctccatggttcacctag 69
Query: 81 tttttagtacc 91
||||||||||
Sbjct: 70 cttttagtacc 80
>RF00641;mir-154;ABRQ01054376.1/1652-1731 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 42 ttcgctttacttgtgacgaatcatacacgg 71
|||||||||||| ||||||||||| |||||
Sbjct: 31 ttcgctttacttatgacgaatcattcacgg 60
