miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00756;mir-299;ABDC01257670.1/1456-1394 30608:Microcebus murinus
(gray mouse lemur)
Length = 63
Score = 101 bits (51), Expect = 2e-21
Identities = 60/63 (95%)
Strand = Plus / Minus
Query: 20 aagaaatggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaaccgctt 79
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 63 aagaaatggtttaccgtcccacatacattttctatatgtatgtgggacggtaaaccgctt 4
Query: 80 ctt 82
|||
Sbjct: 3 ctt 1
Score = 65.9 bits (33), Expect = 1e-10
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 27 ggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaacc 75
||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 8 ggtttaccgtcccacatacatatagaaaatgtatgtgggacggtaaacc 56
>RF00756;mir-299;AAGU02503119.1/1549-1611 9785:Loxodonta africana
(African savanna elephant)
Length = 63
Score = 101 bits (51), Expect = 2e-21
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 20 aagaaatggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaaccgctt 79
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct: 1 aagaaatggtttaccgtcccacatacattttgaatatgtatgtgggatggtaaaccactt 60
Query: 80 ctt 82
|||
Sbjct: 61 ctt 63
Score = 63.9 bits (32), Expect = 4e-10
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 20 aagaaatggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaacc 75
||||| ||||||||| |||||||||||| | || |||||||||||||||||||||
Sbjct: 63 aagaagtggtttaccatcccacatacatattcaaaatgtatgtgggacggtaaacc 8
>RF00756;mir-299;CAAA01169866.1/64-2 10090:Mus musculus (house
mouse)
Length = 63
Score = 71.9 bits (36), Expect = 2e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 20 aagaaatggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaaccgctt 79
||||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||||||
Sbjct: 1 aagaaatggtttaccgtcccacatacattttgagtattgttgtgggacggtgaaccgctt 60
>RF00756;mir-299;AAIY01428934.1/3553-3616 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 64
Score = 65.9 bits (33), Expect = 1e-10
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 30 ttaccgtcccacatacattctgaatatgtatgtgggacggtaaaccgcttctt 82
||||||||||||||||||| | || ||||||||||| |||||||||||||||
Sbjct: 12 ttaccgtcccacatacattttagatgtgtatgtgggatggtaaaccgcttctt 64
