miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054366.1/133-211 9813:Procavia capensis
(cape rock hyrax)
Length = 79
Score = 133 bits (67), Expect = 5e-31
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 10 ggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacacgg 69
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 ggtacttggagagaggtggtccgtggcgcgttcgctttattcatggcgcacattacacgg 60
Query: 70 tcgacctcttt 80
|||||||||||
Sbjct: 61 tcgacctcttt 71
>RF00641;mir-154;AAQR01664930.1/163-240 30611:Otolemur garnettii
(small-eared galago)
Length = 78
Score = 50.1 bits (25), Expect = 5e-06
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 20 gagaggtggtccgtggcgcgttcgctttatttatggcgcacattacacggtcgacctctt 79
||||||| | ||||||||||||||| | | | || |||||| |||||||||||||||||
Sbjct: 10 gagaggtcgcccgtggcgcgttcgcataaatcttgccgcacaatacacggtcgacctctt 69
Query: 80 t 80
|
Sbjct: 70 t 70
>RF00641;mir-154;ABRQ01054376.1/3637-3716 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 61/72 (84%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 10 ggtacttggagagaggtggtccgtggcgcgttcgcttta-tttatggcgcacattacacg 68
||||||||||| ||||| |||||||| | |||||| ||| || ||| || || ||||||
Sbjct: 1 ggtacttggagggaggttgtccgtggtgagttcgcattacttaatgatgcccaatacacg 60
Query: 69 gtcgacctcttt 80
||||||||||||
Sbjct: 61 gtcgacctcttt 72
>RF00641;mir-154;AANG01133004.1/8169-8248 9685:Felis catus
(domestic cat)
Length = 80
Score = 46.1 bits (23), Expect = 9e-05
Identities = 60/71 (84%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 17 ggagagaggtggtccgtggcgcgttcgctttattta-tggcgcacattacacggtcgacc 75
|||||||||| |||||||| | |||||| ||||||| || || || ||||||||||| |
Sbjct: 8 ggagagaggttgtccgtggtgagttcgcattatttaatgatgcccaatacacggtcgatc 67
Query: 76 tctttgcggta 86
||||| |||||
Sbjct: 68 tcttttcggta 78
