miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAEX02019639.1/170908-170986 9615:Canis lupus
familiaris (dog)
Length = 79
Score = 101 bits (51), Expect = 2e-21
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 19 tgcttgaggagaggttgcccgtggccggttcgcattcttcatgtcgcacaatacacggtc 78
|||||||||||||| |||||||||| |||||||||| ||||| ||||||||||||||||
Sbjct: 3 tgcttgaggagaggctgcccgtggcgcgttcgcattcatcatgacgcacaatacacggtc 62
Query: 79 ggcctctcttc 89
|||||||||||
Sbjct: 63 ggcctctcttc 73
>RF00641;mir-154;ABRT010163759.1/1028-1106 9478:Tarsius syrichta
(Philippine tarsier)
Length = 79
Score = 73.8 bits (37), Expect = 4e-13
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 23 tgaggagaggttgcccgtggccggttcgcattcttcatgtcgcacaatacacggtcggcc 82
||||||||||||||||||||| |||||||| ||||| |||||||||| |||| | ||
Sbjct: 7 tgaggagaggttgcccgtggcgcgttcgcatcgatcatgacgcacaatacgcggttgacc 66
Query: 83 tctcttcggtatc 95
|||||||||||||
Sbjct: 67 tctcttcggtatc 79
>RF00641;mir-154;ABRQ01054379.1/1039-1115 9813:Procavia capensis
(cape rock hyrax)
Length = 77
Score = 63.9 bits (32), Expect = 4e-10
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 22 ttgaggagaggttgcccgtggccggttcgcattcttcatgtcgcacaatacacggtcggc 81
|||||||||||||||||||| || |||||||| ||||| |||||||||||||||| |
Sbjct: 5 ttgaggagaggttgcccgtgcgcg-ttcgcatttctcatgatgcacaatacacggtcgac 63
Query: 82 ctctcttc 89
||||||||
Sbjct: 64 ctctcttc 71
>RF00641;mir-154;AAQR01664930.1/163-240 30611:Otolemur garnettii
(small-eared galago)
Length = 78
Score = 56.0 bits (28), Expect = 1e-07
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 22 ttgaggagaggttgcccgtggccggttcgcattcttcatgtcgcacaatacacggtcggc 81
|||||||||||| ||||||||| |||||||| || || ||||||||||||||||| |
Sbjct: 5 ttgaggagaggtcgcccgtggcgcgttcgcataaatcttgccgcacaatacacggtcgac 64
Query: 82 ctct 85
||||
Sbjct: 65 ctct 68
>RF00641;mir-154;ABRP01151524.1/22273-22350 132908:Pteropus
vampyrus (large flying fox)
Length = 78
Score = 46.1 bits (23), Expect = 9e-05
Identities = 57/67 (85%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 23 tgaggagaggttgcccgtggccggttcgcattcttcatgtcgcacaatacacggtcggcc 82
|||||||||||||||||||| | | |||||| | | ||| ||||| ||||||||||| |
Sbjct: 7 tgaggagaggttgcccgtgggc-gctcgcatccattatgacgcacgatacacggtcgatc 65
Query: 83 tctcttc 89
|||||||
Sbjct: 66 tctcttc 72
