miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054372.1/1100-1179 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 143 bits (72), Expect = 5e-34
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 11 ggtatttaaaaggtggatattccgtctatgtttatgttatttatggttaaacatagagga 70
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatgtttatgttatttatggttaaacatagagga 60
Query: 71 aattccacgttttcagtatc 90
|||||||| |||||||||||
Sbjct: 61 aattccacattttcagtatc 80
>RF00641;mir-154;AANN01196583.1/1560-1639 9365:Erinaceus europaeus
(western European hedgehog)
Length = 80
Score = 87.7 bits (44), Expect = 3e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 11 ggtatttaaaaggtggatattccgtctatgtttatgttatttatggttaaacatagagga 70
||||||||||||||||||||| | ||||||||||| ||| |||||||||| |||||||
Sbjct: 1 ggtatttaaaaggtggatatttcttctatgtttattggattcatggttaaacgtagagga 60
Query: 71 aattccacgttttcagtatc 90
| |||||| |||||||||||
Sbjct: 61 agttccactttttcagtatc 80
>RF00641;mir-154;AAGW01206553.1/1248-1327 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 87.7 bits (44), Expect = 3e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 11 ggtatttaaaaggtggatattccgtctatgtttatgttatttatggttaaacatagagga 70
|||||||||||||||||| |||| |||||||||| || ||| ||||||| |||||||||
Sbjct: 1 ggtatttaaaaggtggattttccttctatgtttacgtgattgctggttaatcatagagga 60
Query: 71 aattccacgttttcagtatc 90
|| |||| ||||||||||||
Sbjct: 61 aaatccatgttttcagtatc 80
>RF00641;mir-154;AAQR01332677.1/6513-6587 30611:Otolemur garnettii
(small-eared galago)
Length = 75
Score = 73.8 bits (37), Expect = 4e-13
Identities = 61/65 (93%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 11 ggtatttaaaaggtggatattccgtctatgtttatgttatttatggttaaacatagagga 70
||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatg-ttatg-tatttatggtt-aacatagagga 57
Query: 71 aattc 75
|||||
Sbjct: 58 aattc 62
>RF00641;mir-154;ABRQ01054372.1/2194-2273 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 71.9 bits (36), Expect = 2e-12
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 11 ggtatttaaaaggtggatattccgtctatgtttatgttatttatggttaaacatagagga 70
|||||||||||||| ||| ||| |||||| || ||||||||| |||| |||||||||
Sbjct: 1 ggtatttaaaaggtagattctccttctatgagtacattatttatgattaatcatagagga 60
Query: 71 aattccacgttttcagtatc 90
|| |||||||||||||||||
Sbjct: 61 aaatccacgttttcagtatc 80
>RF00641;mir-154;AAIY01443497.1/2027-2105 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 67.9 bits (34), Expect = 2e-11
Identities = 68/78 (87%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 11 ggtatttaaaaggtggatattccgtctatgtttatgttatttatggttaaacatagagga 70
|||||||||||||| ||| |||| | |||| ||| ||| || |||||||| |||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttttatggttacgtt-ttgatggttaatcatagagga 59
Query: 71 aattccacgttttcagta 88
|| |||||||||||||||
Sbjct: 60 aaatccacgttttcagta 77
>RF00641;mir-154;ABRT010163748.1/957-1036 9478:Tarsius syrichta
(Philippine tarsier)
Length = 80
Score = 65.9 bits (33), Expect = 1e-10
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 18 aaaaggtggatattccgtctatgtttatgttatttatggttaaacatagaggaaattcca 77
|||||||||||||||| |||||||||| |||||| ||||| ||||||||||| ||||
Sbjct: 8 aaaaggtggatattccttctatgtttacagaatttatagttaatcatagaggaaaatcca 67
Query: 78 cgttttcag 86
| |||||||
Sbjct: 68 cattttcag 76
>RF00641;mir-154;CAAA01088157.1/21210-21131 10090:Mus musculus
(house mouse)
Length = 80
Score = 63.9 bits (32), Expect = 4e-10
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 11 ggtatttaaaaggtggatattccgtctatgtttatgttatttatggttaaacatagagga 70
||||||||||||||||||||||| |||||| ||| || || ||| ||| |||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatggttacgtgcttcctggataatcatagagga 60
Query: 71 aattccacgttttcagtatc 90
| ||||| |||||||||||
Sbjct: 61 acatccactttttcagtatc 80
>RF00641;mir-154;AAEX02019639.1/145777-145856 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 60.0 bits (30), Expect = 6e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 22 ggtggatattccgtctatgtttatgttatttatggttaaacatagaggaaattccacgtt 81
||||||| |||| |||||||||| | |||||| ||||| ||||||||||| ||||||||
Sbjct: 12 ggtggatgttccttctatgtttacgggatttatagttaatcatagaggaaaatccacgtt 71
Query: 82 tt 83
||
Sbjct: 72 tt 73
>RF00641;mir-154;AADB02234032.1/262-341 9606:Homo sapiens (human)
Length = 80
Score = 60.0 bits (30), Expect = 6e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 53 atggttaaacatagaggaaattccacgttttcagtatc 90
|||||||| ||||||||||| |||||||||||||||||
Sbjct: 43 atggttaatcatagaggaaaatccacgttttcagtatc 80
>RF00641;mir-154;AANU01197805.1/77711-77790 9544:Macaca mulatta
(rhesus monkey)
Length = 80
Score = 60.0 bits (30), Expect = 6e-09
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 17 taaaaggtggatattccgtctatgtttatgttatttatggttaaacatagaggaaattcc 76
|||||||||||| |||| |||||| ||| |||||||||||| ||||||||||| |||
Sbjct: 7 taaaaggtggatgttccttctatgcttacaggatttatggttaatcatagaggaaaatcc 66
Query: 77 acgttttcagtatc 90
|| || ||||||||
Sbjct: 67 acattgtcagtatc 80
>RF00641;mir-154;AAYZ01424898.1/1376-1455 9978:Ochotona princeps
(American pika)
Length = 80
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 57 ttaaacatagaggaaattccacgttttcagtatc 90
|||| |||||||||||||||||||||||||||||
Sbjct: 47 ttaatcatagaggaaattccacgttttcagtatc 80
>RF00641;mir-154;ABRQ01054372.1/730-809 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 60.0 bits (30), Expect = 6e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 18 aaaaggtggatattccgtctatgtttatgttatttatg 55
|||||||||||||||| ||||||||||||| |||||||
Sbjct: 8 aaaaggtggatattccttctatgtttatgtgatttatg 45
>RF00641;mir-154;ABDC01257673.1/7254-7333 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 18 aaaaggtggatattccgtctatgtttatgttatttatggttaaacatagaggaaattcca 77
||||||||||| |||| |||||||||| |||| ||||||| ||||||||||| ||||
Sbjct: 8 aaaaggtggatgttccttctatgtttacaggatttgtggttaatcatagaggaaaatcca 67
Query: 78 cgttttcag 86
| |||||||
Sbjct: 68 cattttcag 76
>RF00641;mir-154;AAFC03087120.1/1987-1908 9913:Bos taurus (cattle)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 13 tatttaaaaggtggatattccgtctatgtttatgttatttatggttaaacatagaggaaa 72
|||| |||||||||||||||| |||||||||| ||| | | |||||||||||||||
Sbjct: 3 tattcaaaaggtggatattccttctatgtttacaggattgacagctaaacatagaggaaa 62
Query: 73 ttccacgttttcagtatc 90
||||| |||| ||||||
Sbjct: 63 atccacattttaagtatc 80
>RF00641;mir-154;AAGW01206553.1/954-1033 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 54 tggttaaacatagaggaaattccacgttttcagtatc 90
||||||| ||||||||||| ||||| |||||||||||
Sbjct: 44 tggttaatcatagaggaaaatccacattttcagtatc 80
>RF00641;mir-154;ABRP01151523.1/16147-16226 132908:Pteropus
vampyrus (large flying fox)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 19 aaaggtggatattccgtctatgtttatgttatttatggttaaacatagaggaaattccac 78
|||||||||| |||| |||||||||| ||||||||||| ||||||||||| |||||
Sbjct: 9 aaaggtggattttccttctatgtttacagggtttatggttaagcatagaggaaaatccac 68
>RF00641;mir-154;AAGV020362611.1/5630-5708 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 79
Score = 46.1 bits (23), Expect = 9e-05
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 44 atgttatttatggttaaacatagaggaaattccacgttttcagtatc 90
|||| |||||||||||| ||||||||||| ||| | |||| ||||||
Sbjct: 33 atgtgatttatggttaatcatagaggaaactccccatttttagtatc 79
>RF00641;mir-154;ABRN01448850.1/16136-16215 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 80
Score = 46.1 bits (23), Expect = 9e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 56 gttaaacatagaggaaattccacgttttcagtatc 90
||||| ||||||||||| ||||| |||||||||||
Sbjct: 46 gttaagcatagaggaaaatccacattttcagtatc 80
>RF00641;mir-154;AAQR01332677.1/6164-6240 30611:Otolemur garnettii
(small-eared galago)
Length = 77
Score = 44.1 bits (22), Expect = 4e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 23 gtggatattccgtctatgtttatgttatttatggttaaacatagaggaaa 72
|||||| |||| |||||||||| |||||||||||| |||||||||||
Sbjct: 10 gtggatgttccttctatgtttacaggatttatggttaatcatagaggaaa 59
