miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AADB02234032.1/262-341 9606:Homo sapiens (human)
Length = 80
Score = 105 bits (53), Expect = 1e-22
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 28 ggtagattttccttctatggttacgggtttggtgattaatcatagaggaaaatccacatt 87
||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| ||
Sbjct: 12 ggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaaatccacgtt 71
Query: 88 ttcagtatc 96
|||||||||
Sbjct: 72 ttcagtatc 80
>RF00641;mir-154;AAGW01206553.1/954-1033 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 103 bits (52), Expect = 5e-22
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 17 ggtatttaaaaggtagattttccttctatggttacgggtttggtgattaatcatagagga 76
|||||||||||||||||||||||||| ||| ||||| ||| || ||||||||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttcaatgattacgtgttgcctggttaatcatagagga 60
Query: 77 aaatccacattttcagtatc 96
||||||||||||||||||||
Sbjct: 61 aaatccacattttcagtatc 80
>RF00641;mir-154;AAIY01443497.1/2027-2105 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 99.6 bits (50), Expect = 7e-21
Identities = 72/78 (92%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 17 ggtatttaaaaggtagattttccttctatggttacgggtttggtgattaatcatagagga 76
||||||||||||||||||||||||| ||||||||| | |||| || ||||||||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttttatggttac-gttttgatggttaatcatagagga 59
Query: 77 aaatccacattttcagta 94
|||||||| |||||||||
Sbjct: 60 aaatccacgttttcagta 77
>RF00641;mir-154;AAGW01206553.1/1248-1327 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 95.6 bits (48), Expect = 1e-19
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 17 ggtatttaaaaggtagattttccttctatggttacgggtttggtgattaatcatagagga 76
|||||||||||||| ||||||||||||||| ||||| | ||| || ||||||||||||||
Sbjct: 1 ggtatttaaaaggtggattttccttctatgtttacgtgattgctggttaatcatagagga 60
Query: 77 aaatccacattttcagtatc 96
||||||| |||||||||||
Sbjct: 61 aaatccatgttttcagtatc 80
>RF00641;mir-154;ABDC01257673.1/7254-7333 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 81.8 bits (41), Expect = 2e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 24 aaaaggtagattttccttctatggttacgggtttggtgattaatcatagaggaaaatcca 83
||||||| ||| ||||||||||| |||| || || ||| |||||||||||||||||||||
Sbjct: 8 aaaaggtggatgttccttctatgtttacaggatttgtggttaatcatagaggaaaatcca 67
Query: 84 cattttcag 92
|||||||||
Sbjct: 68 cattttcag 76
>RF00641;mir-154;CAAA01088157.1/21210-21131 10090:Mus musculus
(house mouse)
Length = 80
Score = 79.8 bits (40), Expect = 7e-15
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 17 ggtatttaaaaggtagattttccttctatggttacgggtttggtgattaatcatagagga 76
|||||||||||||| ||| ||||||||||||||||| | || || |||||||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatggttacgtgcttcctggataatcatagagga 60
Query: 77 aaatccacattttcagtatc 96
| |||||| |||||||||||
Sbjct: 61 acatccactttttcagtatc 80
>RF00641;mir-154;ABRQ01054372.1/2194-2273 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 79.8 bits (40), Expect = 7e-15
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 17 ggtatttaaaaggtagattttccttctatggttacgggtttggtgattaatcatagagga 76
||||||||||||||||||| |||||||||| ||| || |||||||||||||||||
Sbjct: 1 ggtatttaaaaggtagattctccttctatgagtacattatttatgattaatcatagagga 60
Query: 77 aaatccacattttcagtatc 96
|||||||| |||||||||||
Sbjct: 61 aaatccacgttttcagtatc 80
>RF00641;mir-154;AANU01197805.1/77711-77790 9544:Macaca mulatta
(rhesus monkey)
Length = 80
Score = 75.8 bits (38), Expect = 1e-13
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 23 taaaaggtagattttccttctatggttacgggtttggtgattaatcatagaggaaaatcc 82
|||||||| ||| ||||||||||| |||| || || || ||||||||||||||||||||
Sbjct: 7 taaaaggtggatgttccttctatgcttacaggatttatggttaatcatagaggaaaatcc 66
Query: 83 acattttcagtatc 96
||||| ||||||||
Sbjct: 67 acattgtcagtatc 80
>RF00641;mir-154;ABRQ01054372.1/1857-1937 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 73.8 bits (37), Expect = 4e-13
Identities = 71/81 (87%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 17 ggtatttaaaaggtagattttccttctatggtt-acgggtttggtgattaatcatagagg 75
|||||||||||||| ||||||||| ||||| || || | || ||| |||||||||||||
Sbjct: 1 ggtatttaaaaggtggattttcctcctatgttttacatgcttcgtggttaatcatagagg 60
Query: 76 aaaatccacattttcagtatc 96
|||||||| ||||||||||||
Sbjct: 61 aaaatccatattttcagtatc 81
>RF00641;mir-154;ABRP01151523.1/16147-16226 132908:Pteropus
vampyrus (large flying fox)
Length = 80
Score = 63.9 bits (32), Expect = 4e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 25 aaaggtagattttccttctatggttacgggtttggtgattaatcatagaggaaaatccac 84
|||||| ||||||||||||||| |||| || || || |||| |||||||||||||||||
Sbjct: 9 aaaggtggattttccttctatgtttacagggtttatggttaagcatagaggaaaatccac 68
Query: 85 attttcag 92
|| |||||
Sbjct: 69 atgttcag 76
>RF00641;mir-154;AAYZ01424898.1/1376-1455 9978:Ochotona princeps
(American pika)
Length = 80
Score = 63.9 bits (32), Expect = 4e-10
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 17 ggtatttaaaaggtagattttccttctatggttacgggtttggtgattaatcatagagga 76
|||||||||||||| ||||||||||| ||| |||| ||| | ||||||||||||||
Sbjct: 1 ggtatttaaaaggtggattttccttccatgattacatgttgccttcttaatcatagagga 60
Query: 77 aaatccacattttcagtatc 96
|| ||||| |||||||||||
Sbjct: 61 aattccacgttttcagtatc 80
>RF00641;mir-154;ABRQ01054372.1/1100-1179 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 63.9 bits (32), Expect = 4e-10
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 17 ggtatttaaaaggtagattttccttctatggttacgggtttggtgattaatcatagagga 76
|||||||||||||| ||| ||||||||||| ||| | || || |||| |||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatgtttatgttatttatggttaaacatagagga 60
Query: 77 aaatccacattttcagtatc 96
|| |||||||||||||||||
Sbjct: 61 aattccacattttcagtatc 80
>RF00641;mir-154;ABRN01448850.1/16136-16215 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 80
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 63 ttaatcatagaggaaaatccacattttcagtatc 96
|||| |||||||||||||||||||||||||||||
Sbjct: 47 ttaagcatagaggaaaatccacattttcagtatc 80
>RF00641;mir-154;ABRT010163748.1/957-1036 9478:Tarsius syrichta
(Philippine tarsier)
Length = 80
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 63 ttaatcatagaggaaaatccacattttcag 92
||||||||||||||||||||||||||||||
Sbjct: 47 ttaatcatagaggaaaatccacattttcag 76
>RF00641;mir-154;AAKN02051949.1/111080-111159 10141:Cavia
porcellus (domestic guinea pig)
Length = 80
Score = 60.0 bits (30), Expect = 6e-09
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 17 ggtatttaaaaggtagattttccttctatggttacgggtttggtgattaatcatagagga 76
|||||||||||||| ||||||||| ||||| ||| | || | || ||||||||| |||
Sbjct: 1 ggtatttaaaaggtggattttcctcctatgattatgcattggctggttaatcatacggga 60
Query: 77 aaatccacattttcagta 94
|||||||| |||||||||
Sbjct: 61 aaatccacgttttcagta 78
>RF00641;mir-154;AAPE01089191.1/159-237 59463:Myotis lucifugus
(little brown bat)
Length = 79
Score = 52.0 bits (26), Expect = 2e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 17 ggtatttaaaaggtagattttccttctatggttacgggtttggtgattaatcatagagga 76
|||||| ||||||||| |||||||||||| |||| || || ||| |||| |||||||||
Sbjct: 1 ggtattgaaaaggtaggttttccttctattattacaggctttgtggttaaccatagagga 60
Query: 77 aa 78
||
Sbjct: 61 aa 62
>RF00641;mir-154;AAFC03087120.1/1987-1908 9913:Bos taurus (cattle)
Length = 80
Score = 52.0 bits (26), Expect = 2e-06
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 19 tatttaaaaggtagattttccttctatggttacgggtttggtgattaatcatagaggaaa 78
|||| ||||||| ||| ||||||||||| |||| || ||| ||| |||||||||||
Sbjct: 3 tattcaaaaggtggatattccttctatgtttacaggattgacagctaaacatagaggaaa 62
Query: 79 atccacattttcagtatc 96
||||||||||| ||||||
Sbjct: 63 atccacattttaagtatc 80
>RF00641;mir-154;AAEX02019639.1/145777-145856 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 52.0 bits (26), Expect = 2e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 36 ttccttctatggttacgggtttggtgattaatcatagaggaaaatccacatttt 89
||||||||||| ||||||| || | |||||||||||||||||||||| ||||
Sbjct: 20 ttccttctatgtttacgggatttatagttaatcatagaggaaaatccacgtttt 73
>RF00641;mir-154;AAQR01332677.1/6164-6240 30611:Otolemur garnettii
(small-eared galago)
Length = 77
Score = 52.0 bits (26), Expect = 2e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 36 ttccttctatggttacgggtttggtgattaatcatagaggaaaatccacatttt 89
||||||||||| |||| || || || |||||||||||||||||| ||||||||
Sbjct: 17 ttccttctatgtttacaggatttatggttaatcatagaggaaaattcacatttt 70
>RF00641;mir-154;AANG01662501.1/383-463 9685:Felis catus (domestic
cat)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 63 ttaatcatagaggaaaatccacattttc 90
|||||||||||||||||||||| |||||
Sbjct: 48 ttaatcatagaggaaaatccacgttttc 75
>RF00641;mir-154;AAGV020362611.1/5630-5708 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 79
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 63 ttaatcatagaggaaaatccacattttcagtatc 96
|||||||||||||||| ||| |||||| ||||||
Sbjct: 46 ttaatcatagaggaaactccccatttttagtatc 79
>RF00641;mir-154;AAQR01332677.1/6513-6587 30611:Otolemur garnettii
(small-eared galago)
Length = 75
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 17 ggtatttaaaaggtagattttccttctatg 46
|||||||||||||| ||| |||||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatg 30
