miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAFC03087120.1/1987-1908 9913:Bos taurus (cattle)
Length = 80
Score = 159 bits (80), Expect = 9e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 12 gatattcaaaaggtggatattccttctatgtttacaggattgacagctaaacatagagga 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatattcaaaaggtggatattccttctatgtttacaggattgacagctaaacatagagga 60
Query: 72 aaatccacattttaagtatc 91
||||||||||||||||||||
Sbjct: 61 aaatccacattttaagtatc 80
>RF00641;mir-154;ABRN01448850.1/16136-16215 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 80
Score = 95.6 bits (48), Expect = 1e-19
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 12 gatattcaaaaggtggatattccttctatgtttacaggattgacagctaaacatagagga 71
||||||||||| |||||| ||||| |||||||||||||||| || | ||| |||||||||
Sbjct: 1 gatattcaaaaagtggatgttcctcctatgtttacaggatttactgttaagcatagagga 60
Query: 72 aaatccacattttaagtatc 91
||||||||||||| ||||||
Sbjct: 61 aaatccacattttcagtatc 80
>RF00641;mir-154;ABRT010163748.1/957-1036 9478:Tarsius syrichta
(Philippine tarsier)
Length = 80
Score = 93.7 bits (47), Expect = 4e-19
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 18 caaaaggtggatattccttctatgtttacaggattgacagctaaacatagaggaaaatcc 77
||||||||||||||||||||||||||||||| ||| | || ||| |||||||||||||||
Sbjct: 7 caaaaggtggatattccttctatgtttacagaatttatagttaatcatagaggaaaatcc 66
Query: 78 acatttt 84
|||||||
Sbjct: 67 acatttt 73
>RF00641;mir-154;ABDC01257673.1/7254-7333 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 83.8 bits (42), Expect = 4e-16
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 15 attcaaaaggtggatattccttctatgtttacaggattgacagctaaacatagaggaaaa 74
||||||||||||||| |||||||||||||||||||||| | ||| ||||||||||||
Sbjct: 4 attcaaaaggtggatgttccttctatgtttacaggatttgtggttaatcatagaggaaaa 63
Query: 75 tccacatttt 84
||||||||||
Sbjct: 64 tccacatttt 73
>RF00641;mir-154;AAEX02019639.1/145777-145856 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 73.8 bits (37), Expect = 4e-13
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 12 gatattcaaaaggtggatattccttctatgtttacaggattgacagctaaacatagagga 71
|||||||| | ||||||| |||||||||||||||| ||||| | || ||| |||||||||
Sbjct: 1 gatattcagacggtggatgttccttctatgtttacgggatttatagttaatcatagagga 60
Query: 72 aaatccacatttt 84
|||||||| ||||
Sbjct: 61 aaatccacgtttt 73
>RF00641;mir-154;AAQR01332677.1/6164-6240 30611:Otolemur garnettii
(small-eared galago)
Length = 77
Score = 73.8 bits (37), Expect = 4e-13
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 24 gtggatattccttctatgtttacaggattgacagctaaacatagaggaaaatccacattt 83
|||||| |||||||||||||||||||||| | | ||| ||||||||||||| |||||||
Sbjct: 10 gtggatgttccttctatgtttacaggatttatggttaatcatagaggaaaattcacattt 69
Query: 84 taagt 88
|||||
Sbjct: 70 taagt 74
>RF00641;mir-154;AANU01197805.1/77711-77790 9544:Macaca mulatta
(rhesus monkey)
Length = 80
Score = 73.8 bits (37), Expect = 4e-13
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 19 aaaaggtggatattccttctatgtttacaggattgacagctaaacatagaggaaaatcca 78
||||||||||| ||||||||||| |||||||||| | | ||| ||||||||||||||||
Sbjct: 8 aaaaggtggatgttccttctatgcttacaggatttatggttaatcatagaggaaaatcca 67
Query: 79 cattttaagtatc 91
|||| | ||||||
Sbjct: 68 cattgtcagtatc 80
>RF00641;mir-154;AANG01662501.1/383-463 9685:Felis catus (domestic
cat)
Length = 81
Score = 71.9 bits (36), Expect = 2e-12
Identities = 64/72 (88%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 14 tattcaaaaggtggatattccttctatgtttacagga-ttgacagctaaacatagaggaa 72
|||||| ||||||||| |||||||||||||||| ||| || |||| ||| ||||||||||
Sbjct: 3 tattcagaaggtggatgttccttctatgtttacgggacttaacagttaatcatagaggaa 62
Query: 73 aatccacatttt 84
||||||| ||||
Sbjct: 63 aatccacgtttt 74
>RF00641;mir-154;ABRP01151523.1/16147-16226 132908:Pteropus
vampyrus (large flying fox)
Length = 80
Score = 67.9 bits (34), Expect = 2e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 20 aaaggtggatattccttctatgtttacaggattgacagctaaacatagaggaaaatccac 79
|||||||||| ||||||||||||||||||| || | | ||| |||||||||||||||||
Sbjct: 9 aaaggtggattttccttctatgtttacagggtttatggttaagcatagaggaaaatccac 68
Query: 80 at 81
||
Sbjct: 69 at 70
>RF00641;mir-154;ABRQ01054372.1/1100-1179 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 67.9 bits (34), Expect = 2e-11
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 14 tattcaaaaggtggatattccttctatgtttacaggattgacagctaaacatagaggaaa 73
|||| ||||||||||||||||||||||||||| ||| | | |||||||||||||||
Sbjct: 3 tatttaaaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaaa 62
Query: 74 atccacattttaagtatc 91
|||||||||| ||||||
Sbjct: 63 ttccacattttcagtatc 80
>RF00641;mir-154;AAGW01206553.1/1248-1327 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 60.0 bits (30), Expect = 6e-09
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 14 tattcaaaaggtggatattccttctatgtttacaggattgacagctaaacatagaggaaa 73
|||| ||||||||||| |||||||||||||||| ||||| | ||| |||||||||||
Sbjct: 3 tatttaaaaggtggattttccttctatgtttacgtgattgctggttaatcatagaggaaa 62
Query: 74 atccacattttaagtatc 91
||||| |||| ||||||
Sbjct: 63 atccatgttttcagtatc 80
>RF00641;mir-154;ABRQ01054372.1/730-809 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 16 ttcaaaaggtggatattccttctatgttta 45
||||||||||||||||||||||||||||||
Sbjct: 5 ttcaaaaggtggatattccttctatgttta 34
>RF00641;mir-154;AANN01196583.1/1560-1639 9365:Erinaceus europaeus
(western European hedgehog)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 14 tattcaaaaggtggatattccttctatgtttacaggattgacagctaaacatagaggaaa 73
|||| |||||||||||||| |||||||||||| ||||| | | ||||| ||||||||
Sbjct: 3 tatttaaaaggtggatatttcttctatgtttattggattcatggttaaacgtagaggaag 62
Query: 74 atccacattttaagtatc 91
||||| |||| ||||||
Sbjct: 63 ttccactttttcagtatc 80
>RF00641;mir-154;AAQR01332677.1/6513-6587 30611:Otolemur garnettii
(small-eared galago)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 14 tattcaaaaggtggatattccttctatgtt 43
|||| |||||||||||||||||||||||||
Sbjct: 3 tatttaaaaggtggatattccttctatgtt 32
>RF00641;mir-154;CABD01018504.1/18447-18522 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 76
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 19 aaaaggtggatattccttctatgtttacaggatt 52
||||||||||| ||||||||||| ||||||||||
Sbjct: 7 aaaaggtggatgttccttctatgcttacaggatt 40
>RF00641;mir-154;CAAA01088157.1/21210-21131 10090:Mus musculus
(house mouse)
Length = 80
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 14 tattcaaaaggtggatattccttctatgtttac 46
|||| ||||||||||||||||||||||| ||||
Sbjct: 3 tatttaaaaggtggatattccttctatggttac 35
>RF00641;mir-154;AAGW01206553.1/392-471 9986:Oryctolagus cuniculus
(rabbit)
Length = 80
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 14 tattcaaaaggtggatattccttctatgt 42
|||||||||||||||| ||||||||||||
Sbjct: 3 tattcaaaaggtggatgttccttctatgt 31
>RF00641;mir-154;AAGW01206553.1/954-1033 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 63 catagaggaaaatccacattttaagtatc 91
|||||||||||||||||||||| ||||||
Sbjct: 52 catagaggaaaatccacattttcagtatc 80
