miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAGU02626699.1/1300-1379 9785:Loxodonta africana
(African savanna elephant)
Length = 80
Score = 135 bits (68), Expect = 2e-31
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 37 gatccttgagcagaggttgcctttggtgaattcgctttatttatgttgaatcacacaaag 96
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatccctgagcagaggttgcccttggtgaattcgctttatttatgttgaatcacacaaag 60
Query: 97 gcaacttttgtttgag 112
||||||||||||||||
Sbjct: 61 gcaacttttgtttgag 76
>RF00641;mir-154;AAIY01409313.1/249-170 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 83.8 bits (42), Expect = 5e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 37 gatccttgagcagaggttgcctttggtgaattcgctttatttatgttgaatcacacaaag 96
||||| ||||||| |||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 1 gatccctgagcaggggttgctcttggtgaattcgctttattcttgttgaatcacacaaag 60
Query: 97 gcaacttttgtttg 110
| |||||| |||||
Sbjct: 61 gtaactttggtttg 74
>RF00641;mir-154;ABRQ01054378.1/68-143 9813:Procavia capensis (cape
rock hyrax)
Length = 76
Score = 73.8 bits (37), Expect = 5e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 76 tttatgttgaatcacacaaaggcaacttttgtttgagtatc 116
|||||||||||||||||||||||| ||||||||||||||||
Sbjct: 36 tttatgttgaatcacacaaaggcagcttttgtttgagtatc 76
